Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0381 ATGAGTTTTGTCTTCAGAGGGAGTAGGGGAGATATTGAAAGTGGCTTCTCAGAATATGTTCCTGAAAGAACCTTGATGCGGGTTCATCCAGCTCGGCCAGTTAATGGAAATTCTCTAGCTTTTCTTATCACAGTTATTTTGATATTCATGATATTAAACGCACCTCAGATGTTACATAATTTTTTGCTCTGGGTTGTACTGGCTATCTTTGTGATGGCTACAAGTCTGAGGATGTATGCAACTTGTCAACAGCTTCAAGCACAGGCCAGGGCTCATGCTGCAGCAGCCTCTGGGTTGCTTAGCCATACCGAACTTCGTCTTCACATGCCACCGTCTATTGCAATTGCAACCAGAGGAAGATTGCAGGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTCGATGAGCTAGATTATGATACTTTGAGAGCTCTGGACTCTGATACTGCTTCTAGTACTCATTCCATGACTGAGGAAGCGATAAATGCCTTGCCTATTCACACTTATAAAGTTCCAGTCCCACCAAAGTCAGTGTTTGGAGGAGATGGCTCAGCTGGTTTGGCATCTTCTTCAGGTGCAGCTGGGGTAAATATTCATTATCTGTCTCTACTTTTGATAAAACAAGAATCTGGAGGAACAGAGGCCGCAGGTACCAAAGGTCCAGAAGATGAGCTGACATGTACTATATGCTTGGACCAAGTTAAGAGGGGGGAGCTTGTTCGTAGCTTACCATGCTTGCATCAGTTTCATGCAAACTGCATTGATCCATGGCTCCGGCAACAAGCGACATGTCCTGTGTGCAAATTTAGGATAGGGTCCGGAAGTGGAGGAAACAGGGAGACCGAGTCCGATGATTCGGATATTGCTTAG 873 0.4513 MSFVFRGSRGDIESGFSEYVPERTLMRVHPARPVNGNSLAFLITVILIFMILNAPQMLHNFLLWVVLAIFVMATSLRMYATCQQLQAQARAHAAAASGLLSHTELRLHMPPSIAIATRGRLQGLRLQLALLDREFDELDYDTLRALDSDTASSTHSMTEEAINALPIHTYKVPVPPKSVFGGDGSAGLASSSGAAGVNIHYLSLLLIKQESGGTEAAGTKGPEDELTCTICLDQVKRGELVRSLPCLHQFHANCIDPWLRQQATCPVCKFRIGSGSGGNRETESDDSDIA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0381 290 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 289 - -
Aed5g0381 290 Pfam Ring finger domain 227 269 IPR001841 -
Aed5g0381 290 SUPERFAMILY RING/U-box 223 273 - -
Aed5g0381 290 SMART ring_2 228 268 IPR001841 -
Aed5g0381 290 CDD RING-H2_PA-TM-RING 227 269 - -
Aed5g0381 290 ProSiteProfiles Zinc finger RING-type profile. 228 269 IPR001841 -
Aed5g0381 290 PANTHER TARGET OF ERK KINASE MPK-1 1 289 - -
Aed5g0381 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 276 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0381 Aed-Chr5 2726265 2730901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0381 1 290 C3H Transcription Factor Family AT3G55530 66.323 5.06e-123 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0381 K16283 - gmx:100805406 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0381 5 2726265 2730901 Aed5g0381 5 2726265 2730901 ECH