Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0377 ATGGGGGAAGAGGTGAAGACCAGCGAGTACGATGAAGAGCGCGTCATGGAGTGGGAGGCGGGTCTCCCAACCGCTAACGATCTCACGCCTCTCTCTCAGCCTCTGATCCCGCCGGAGCTGGCGTCGGCTTTCAGCATCTCGCCGGAGCCCCACCGCACCCTCTTTGACGTCAACCGCGCGTCACGGAACACGCTCTCCACGCTCCGCGGCGGCGGGAGCGTGCACCAGGCCTTCTCCTCCTCCAACAACAACAACCACTACGACGGCGACGGTGACGGAGACGACGAGGACGACTGCGATCGCGATGGGTCGGGGTCGGATTCCCGGAAGCAGCGGAAGATCGACTGCGGCGCGGTCGAGGAGGCGGACTCGGCGGTGAGGACGGAGACATCAGCGGAGCGGACGGCGGTGAAGCGACCGCGGCTAGTGTGGACCCCGCAGCTGCACAAGAGGTTCGTGGACGTGGTGGCCCACCTCGGGATAAAAAACGCGGTGCCGAAGACGATTATGCAATTGATGAACGTGGAAGGGTTGACTCGCGAGAATGTAGCGAGTCATCTACAGAAGTATCGTCTTTACCTGAAACGGATGCAGGGTCTCTCGAACGAGGGTCCTTCTTCTTCGGATCAGTTATTCGCGTCCACACCTGTGCCTCAGAGTTTGCATGAATCTGCTCCTCCCACTGCGCCCCATGCTCATAGCAATGGCCATAGCCATCTCCCTGTTCCGATGATGTCCATGCCATATCCCCCTCCCATGATGTCCATGCCTGTCATCGGCATGCCCCATGGCCATGGCCACGGCCACGGCCACATGGGCCTCCCCATGCCTACTTCCTCTGCCACCTCAGCGTATCATCCTTATAACATGTTGCATCAAAGTGATTGGTCTCACCTTGCTCCTACTGATAAATGA 915 0.5967 MGEEVKTSEYDEERVMEWEAGLPTANDLTPLSQPLIPPELASAFSISPEPHRTLFDVNRASRNTLSTLRGGGSVHQAFSSSNNNNHYDGDGDGDDEDDCDRDGSGSDSRKQRKIDCGAVEEADSAVRTETSAERTAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHESAPPTAPHAHSNGHSHLPVPMMSMPYPPPMMSMPVIGMPHGHGHGHGHMGLPMPTSSATSAYHPYNMLHQSDWSHLAPTDK 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0377 304 MobiDBLite consensus disorder prediction 1 35 - -
Aed5g0377 304 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 297 - -
Aed5g0377 304 MobiDBLite consensus disorder prediction 67 87 - -
Aed5g0377 304 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 195 IPR017930 -
Aed5g0377 304 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 140 192 IPR006447 GO:0003677
Aed5g0377 304 MobiDBLite consensus disorder prediction 200 222 - -
Aed5g0377 304 Pfam Myb-like DNA-binding domain 143 191 IPR001005 -
Aed5g0377 304 MobiDBLite consensus disorder prediction 1 18 - -
Aed5g0377 304 SUPERFAMILY Homeodomain-like 137 196 IPR009057 -
Aed5g0377 304 MobiDBLite consensus disorder prediction 200 239 - -
Aed5g0377 304 Gene3D - 135 198 - -
Aed5g0377 304 MobiDBLite consensus disorder prediction 67 113 - -
Aed5g0377 304 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 297 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0377 Aed-Chr5 2666464 2667378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0377 1 218 G2-like Transcription Factor Family AT3G46640 62.553 7.57e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aed5g0377 Myb_DNA-binding 1.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0377 - - gmx:100816634 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0377 5 2666464 2667378 Aed5g0377 5 2666464 2667378 ECH