Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0369 ATGGAATCTTCTGATCATCAAGCTGCAGCAGCATCAGAAAATCCCTCTGATCATGATGGAGAGGATCAGCAAGGTGCAAGTCACGTGACATCAAGGTCCTACGAGTGCAACTTCTGCAAGAGGGGCTTCTCTAATGCACAAGCACTCGGGGGACACATGAATATCCATAGGAAAGACAAAGCCAAGCTCAAGCAGCAACAATCTTCGAATCAAATTCAACAGTCTGGTGAAGAAATCAGCAACAAATCATTACCAAAGTGGAATTGGAATGTGTCGTCTCAACAAGAACATGCCAATATTCAAAAGAGGCAGCAGCAGCAGCTTCCACTCTTTGCAGAATCACCAAATAGCAGTGAAACACAAAATCAGCCACAAGGTCATGAAACCACTACTGAACAGCCTTTGTTATCATCAACCCAAGATTCCTCATCGGAGTTGGACCTTGAACTGAGACTAGGACTAATTGAACCACAGGACTCATCAGCAGCAGAAACGGGTACAAGAAATTTTTTTTGA 516 0.438 MESSDHQAAAASENPSDHDGEDQQGASHVTSRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQQSSNQIQQSGEEISNKSLPKWNWNVSSQQEHANIQKRQQQQLPLFAESPNSSETQNQPQGHETTTEQPLLSSTQDSSSELDLELRLGLIEPQDSSAAETGTRNFF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0369 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Aed5g0369 171 PANTHER OS07G0101800 PROTEIN 1 106 - -
Aed5g0369 171 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Aed5g0369 171 Gene3D Classic Zinc Finger 17 144 - -
Aed5g0369 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 99 162 - -
Aed5g0369 171 MobiDBLite consensus disorder prediction 1 31 - -
Aed5g0369 171 Pfam C2H2-type zinc finger 34 58 - -
Aed5g0369 171 PANTHER OS07G0101800 PROTEIN 99 162 - -
Aed5g0369 171 MobiDBLite consensus disorder prediction 50 171 - -
Aed5g0369 171 SUPERFAMILY beta-beta-alpha zinc fingers 31 61 IPR036236 -
Aed5g0369 171 MobiDBLite consensus disorder prediction 65 146 - -
Aed5g0369 171 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0369 Aed-Chr5 2626759 2627274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0369 31 154 C2H2 Transcription Factor Family AT3G53820 37.692 1.00e-17 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g0369 zf-C2H2_6 1.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0369 - - gmx:102667172 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0369 5 2626759 2627274 Aed5g0369 5 2626759 2627274 ECH