Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0352 ATGGAAGTTGCGGCGGCGAAAGCGCTGAAACCAAGCCTTCGGACAGAGTTTATTTTCCCTCAAGCAATTTACGACGATATTTTGTGTTTTAACGCGAACAACATTGCTGCCGCCGGTGAAGATTTCTCCGTGGACGACCTACTTGACTTTTCCAACGGCGAATTCCAACTTGGAAAAGATTTCGACGACTACGAGGACGAGGAAGACGAGGAAAAAGACAGTACCACCTCCGGTTCCTCGCAGAGGCAGGACCGAACCGAAGACGACAGCAACTCTAATTCCACCACCGGAGGAGCCGGCGACTCCGACTCTGTTTTCGCCGGCGAGTTGTCAGTTCCGGCGGACGATGTGGCAGACTTAGAGTGGGTTTCTCACTTTGTGGACGATTCTCTACCGGAGCTATCTCTATTGTACCCCGTCCGTTTCGAGAAAACAATGGTATGGGCCGAACCGGAACCTAGACCGGGCCCAGCCCAAACCGCTTCACCAGTCCCAAGAAAGCCGAGAACTGGAAAGACTAGAAAGCCCAATGCTCGTGTCTGGTCTTTGGCGTTGTCTGGCGCCTTTGAGTTTGGCGAGTCGGCGGCTAAAAAGCAAAAGAAAACGGCCAAGGCCCAAAGCGGTGGGGCCTTATTTTTGCGACGGTGCAGCCACTGCCAGGTGCAGAAAACGCCGCAGTGGAGGACGGGACCACTGGGTCCCAAAACACTTTGCAACGCTTGCGGGGTTCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTATAGACCGGCCTATAGCCCAACTTTTTCTGGGGATATTCACTCCAACAGCCACCGTAAAGTGTTAGAGATGAGACGAAGAAAGGAGATGGCTGATCCGGTTACCGGTTCAGACCGGACTATACTGGTCCCAAGTTGTTGA 900 0.5322 MEVAAAKALKPSLRTEFIFPQAIYDDILCFNANNIAAAGEDFSVDDLLDFSNGEFQLGKDFDDYEDEEDEEKDSTTSGSSQRQDRTEDDSNSNSTTGGAGDSDSVFAGELSVPADDVADLEWVSHFVDDSLPELSLLYPVRFEKTMVWAEPEPRPGPAQTASPVPRKPRTGKTRKPNARVWSLALSGAFEFGESAAKKQKKTAKAQSGGALFLRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPAYSPTFSGDIHSNSHRKVLEMRRRKEMADPVTGSDRTILVPSC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0352 299 ProSitePatterns GATA-type zinc finger domain. 216 241 IPR000679 GO:0006355|GO:0043565
Aed5g0352 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 273 - -
Aed5g0352 299 MobiDBLite consensus disorder prediction 74 89 - -
Aed5g0352 299 ProSiteProfiles GATA-type zinc finger domain profile. 214 246 IPR000679 GO:0006355|GO:0043565
Aed5g0352 299 PANTHER GATA TRANSCRIPTION FACTOR 1 183 - -
Aed5g0352 299 SMART GATA_3 210 260 IPR000679 GO:0006355|GO:0043565
Aed5g0352 299 Gene3D - 213 284 IPR013088 GO:0006355|GO:0008270
Aed5g0352 299 PANTHER GATA TRANSCRIPTION FACTOR 190 298 - -
Aed5g0352 299 MobiDBLite consensus disorder prediction 58 106 - -
Aed5g0352 299 PANTHER GATA TRANSCRIPTION FACTOR 1 183 - -
Aed5g0352 299 MobiDBLite consensus disorder prediction 151 175 - -
Aed5g0352 299 PANTHER GATA TRANSCRIPTION FACTOR 190 298 - -
Aed5g0352 299 PIRSF Txn_fac_GATA_plant 2 294 IPR016679 GO:0003677|GO:0005634|GO:0045893
Aed5g0352 299 Pfam GATA zinc finger 216 249 IPR000679 GO:0006355|GO:0043565
Aed5g0352 299 CDD ZnF_GATA 215 272 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0352 Aed-Chr5 2462346 2464179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0352 41 286 C2C2-Gata Transcription Factor Family AT4G36240 46.275 7.31e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed5g0352 GATA 3.3e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0352 - - gmx:100776188 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0352 5 2462346 2464179 Aed5g0352 5 2462346 2464179 ECH
Aed5g0352 5 2462346 2464179 Aed9g0083 9 591984 593603 ECH