LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g0325	ATGACAGTTGAAAAGAGATTTGTTTTGGTGGGGATTAGAATCGATGGCTATAGCAGACAGCTCCTCAACTGGGCACTTGTCAAAGTTGCTGAACCTGGGGATTGTGTTATAGCACTTCATGTTGTTAAAAGTCCAGATTATGTTTCCAAAAACAAGACCATGATAGATGAATATTTAGAGGTTTATGAAGGCCTATGCGGTGTGAAGAAGGTAGGTCTCACTGGTCAAATTTTCACAGGAAGATCCATTAAAAACATTCTTGTTAGAGAAGCAAAAAAGCATGCTGCTATGGCTCTAGTGGTAGGGGGTGGAGCTGCCACAGCTAAATATTGTGCTAAGCGACTACCACCCACCACCAATGTTCTAGCCATTCAAGACTCAAGAGTTATCTTCAGAAGGTGCACCAATAAACAACAACTACCAGGTGGTCTTATACTGGATCCAAGACCAAGTTTAACAACAATCATAGAAAACCTGAGCGACAAAGTAGTCCAGTCTGCATTATGTGACTCCAACGTGGAGATTGAGGAAACAACATGCAAAGATTCCTCCTTAGAATTGAAGGAGGAAGAATCATTCAACGGATCAGAAAAGAGTAAGTCAAGGTCAATATCCATGTTAGGAGGTGATTCTGCTGAGCAGAAGAAGCTTGGGTGGCCTCTACTCCGCAGAGCCAATTCAGGAATGTCACAAACCCTTCATACAAGGGACATGTCAGTAGTACAATGGGTAATGACCTTACCAGATCGTTCACCACATAAAAGTTCTAGCTCTTTTTCCACTGAGGAAAGTTCATTTGAAAGGAGCATCAGCGATATTGATGATGAGAGCTCTAGAAATTCTTCTCTTCCATCTGTTGATATACCAAATGACCTAGAGGAGATGTTAAATGTGAATTCTCTCAATTGCAAGCGGTTCAGAGGGAGCAATCGAGTGTACAAAGGAATCCTCCCTGATGGAAAGCCAATCGCAGTTAAAGTAATGAAGTTATCAAAAGAAGCCTGGAAAGATTTTGGCCTTGAGGTGGAAATAATATCCTCATTGGAGCACAAAAGCATTGCCCCTCTACTTGGGATTTGCATAGAGAACAATACTTTAATATCTGTTTATGATTATTTCCCCAAAGGCAGCTTAGAGGAAAATCTGCATGGAAAGAACAAGGATTCAAAATCCATATTGTCATGGGAAATGAGATTTAACATAGCTGTTAGGATCGCTGAAGCCCTTGATTACCTACACAGGGAAGCTTTGAAGCCTGTTATACATAAAGATATCAAGTCTTCTAACATTCTTCTCTCCCAAGGCTTTGAACCTCAGGCAAAACCAATAATAGAGAAAGGGAATGTTAAGGGGTTATTGGACCCAAATTTAAAAGGGAGATTTGATGAGGCCCAATTACAAAGAATGGTTCTAGCAGCATCTCTATGCATCACGAGGGCTGCTAGACTTCGTCCTAAACTGAACCAGATACTAAAGATCCTAAAAGGAGATGAGAAAGTTGAATATTTCTTAAATTCTCAATGGAATGATGAGGAGAAGGAGGGTTCAGAAGATGAAGAAAACATTGATGACGAAGTGTATCCAAATTCAAGTGCAGAGTTACACCTAAGTCTTGCATTACTTGGTGTTGACGATGATAGTAGTACATCACACAGTAGTACGGACCACAGCTATATAAGTGAACACTTGAAAGGACAATGGAGCAGGTCATCAAGTTTCAATTAG	1725	0.4052	MTVEKRFVLVGIRIDGYSRQLLNWALVKVAEPGDCVIALHVVKSPDYVSKNKTMIDEYLEVYEGLCGVKKVGLTGQIFTGRSIKNILVREAKKHAAMALVVGGGAATAKYCAKRLPPTTNVLAIQDSRVIFRRCTNKQQLPGGLILDPRPSLTTIIENLSDKVVQSALCDSNVEIEETTCKDSSLELKEEESFNGSEKSKSRSISMLGGDSAEQKKLGWPLLRRANSGMSQTLHTRDMSVVQWVMTLPDRSPHKSSSSFSTEESSFERSISDIDDESSRNSSLPSVDIPNDLEEMLNVNSLNCKRFRGSNRVYKGILPDGKPIAVKVMKLSKEAWKDFGLEVEIISSLEHKSIAPLLGICIENNTLISVYDYFPKGSLEENLHGKNKDSKSILSWEMRFNIAVRIAEALDYLHREALKPVIHKDIKSSNILLSQGFEPQAKPIIEKGNVKGLLDPNLKGRFDEAQLQRMVLAASLCITRAARLRPKLNQILKILKGDEKVEYFLNSQWNDEEKEGSEDEENIDDEVYPNSSAELHLSLALLGVDDDSSTSHSSTDHSYISEHLKGQWSRSSSFN	574

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g0325	574	MobiDBLite	consensus disorder prediction	180	211	-	-
	Aed5g0325	574	MobiDBLite	consensus disorder prediction	249	286	-	-
	Aed5g0325	574	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	420	432	IPR008271	GO:0004672\|GO:0006468
	Aed5g0325	574	MobiDBLite	consensus disorder prediction	249	266	-	-
	Aed5g0325	574	SMART	serkin_6	308	559	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed5g0325	574	PANTHER	OS01G0253100 PROTEIN	6	439	IPR045271	GO:0004714\|GO:0006468
	Aed5g0325	574	MobiDBLite	consensus disorder prediction	180	197	-	-
	Aed5g0325	574	ProSiteProfiles	Protein kinase domain profile.	295	574	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Aed5g0325	574	SUPERFAMILY	Protein kinase-like (PK-like)	310	436	IPR011009	-
	Aed5g0325	574	MobiDBLite	consensus disorder prediction	545	574	-	-
	Aed5g0325	574	PANTHER	OS01G0253100 PROTEIN	440	566	IPR045271	GO:0004714\|GO:0006468
	Aed5g0325	574	Gene3D	Transferase(Phosphotransferase) domain 1	373	450	-	-
	Aed5g0325	574	CDD	USP_Like	8	102	-	-
	Aed5g0325	574	Gene3D	Phosphorylase Kinase; domain 1	277	372	-	-
	Aed5g0325	574	PANTHER	PROTEIN KINASE SUPERFAMILY PROTEIN	440	566	-	-
	Aed5g0325	574	PANTHER	PROTEIN KINASE SUPERFAMILY PROTEIN	6	439	-	-
	Aed5g0325	574	Pfam	Protein kinase domain	311	434	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g0325	Aed-Chr5	2232052	2235867	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed5g0325	308	434	Receptor kinase-like Gene Family	AT1G79680	45.312	7.94e-27	113

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Aed5g0325		Pkinase	3.4e-18	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g0325	-		-	gmx:100789189	681.789