Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0317 ATGGGAAGGTCCCCTTGTTGTGAGAAAGCACACACAAACAAAGGTGCATGGACTAAAGAAGAAGATGACAGACTGATCTCTTATATTCGAGCTCACGGCGAAGGTTGCTGGCGCTCCCTCCCCAAAGCCGCTGGTCTTCTCCGGTGCGGCAAGAGCTGCCGTCTCCGAGGAATCGACCCTGCAACTCATAGGGCTCTCAACGAAGCTGCTGCAACTGTTACAACAGCTGCCACCACTAATATATCTTTTGTGAAACAAGAACAAGAGACAACAAGTTCGAGTAGCGGAAGCGTTGTCAAAGCTTCCATCTTAGAACGCTGCCCTGACTTGAACCTTGAATTAACCATTAGTCCTCCTCGCCAACAACAACAACAGCAGAAGACTCTTTGTTTCGTTTGCAGTTTGGGTTTGAACAACAGCAAGGATTGCAGCTGCAACGTTGTTGTTGTTGCCGCCAACACTGTCAACAACAACACCACTCCTCCTTCTGCTGCTGCTGCTTATGATTTCTTGGGCTTGAAAAACAACGCTGCTGTTTGGGATTGCACCACCTTGGAAATGAAATGA 567 0.4832 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRGIDPATHRALNEAAATVTTAATTNISFVKQEQETTSSSSGSVVKASILERCPDLNLELTISPPRQQQQQQKTLCFVCSLGLNNSKDCSCNVVVVAANTVNNNTTPPSAAAAYDFLGLKNNAAVWDCTTLEMK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0317 188 Gene3D - 14 59 - -
Aed5g0317 188 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 56 152 - -
Aed5g0317 188 ProSiteProfiles Myb-like domain profile. 9 56 IPR001005 -
Aed5g0317 188 PANTHER MYB DOMAIN CLASS TRANSCRIPTION FACTOR 56 152 - -
Aed5g0317 188 CDD SANT 16 56 IPR001005 -
Aed5g0317 188 SUPERFAMILY Homeodomain-like 9 57 IPR009057 -
Aed5g0317 188 PANTHER MYB DOMAIN CLASS TRANSCRIPTION FACTOR 1 56 - -
Aed5g0317 188 Pfam Myb-like DNA-binding domain 14 56 IPR001005 -
Aed5g0317 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 56 IPR017930 -
Aed5g0317 188 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 56 - -
Aed5g0317 188 SMART sant 13 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0317 Aed-Chr5 2182263 2183128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0317 1 59 MYB Transcription Factor Family AT4G38620 89.831 4.93e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed5g0317 Myb_DNA-binding 4.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0317 K09422 - gmx:100306265 158.303