Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0296 ATGGAGAGGAGATCCTATGATGTCTTTGTTTTTCTCCTTGTCTCGGTTGTTTGTCTCTTCCTGTCCCAACCCGCCAGATCAGAAGACGATTCAAAACCACTTCTGGCATTGAAATCCTCCATAGACGTCCACCACAAGCTTCCATGGCGAGAAGGAACCGACGTGTGCACGTGGTTGGGTGTCAGAGACTGCTTCAACGGAAGAGTGAGGAAGCTAGTTCTGGAACACTCCAACTTAACCGGCACTTTGGATTCCAAGATCTTGAACCGTTTGGACCAGCTCAGAGTCCTCAGTTTCAAAGCAAACTCACTCTCCGGCCAAATCCCCAACCTATCCACCTTGGTCAACCTCAAATCGATATTCCTCAACGAAAACAACTTCTCGGGCGAGTTCCCCGCCTCGGTGGCACTCCTCCACCGCGTCAAGGTCATTATTCTGTCGCAAAACCATATCTCCGGCAACATTCCGGCGTCTCTGCTGAATCTCCGGCGACTGTATGTTCTATACTTGCAAGACAACGCGTTCACGGGACGCATTCCCGGTTTCAACCAAAGCAGCCTCAGGTATTTAAATGTGTCCAACAACCGGCTCTCCGGCGAGATTCCGGTGAGCCCGGCATTGATCCGGTTCAATGCGTCGTCGTTTTCAGGGAACCCGGGGCTCTGCGGGGAACAGATAGAACAAGCATGCAAAAACGGCAGCGGTTCATTGGCGCCGTCGATAAGTCCTAGTTATCCGTTACTACCGGGAGGAACAATAACGACGACGACGACGGGGAAAACGAACCGGACGAAATTGATAAAAATAATTGGAGGGACTGTTGGTGGAGTTGTGTTGGTGATAGTGTGCATGGTTATGGTGTGGGCGATTTGCAAGAAGAGGAAGACGAGGAGCAAGGGTGGTGCTGACGTGGCAGAAGGGGAAGGAGAAGGAGGGGATAATAACATTAACAGTAACAAACAACAACAAGGTGGGGGTGGGGGTGGGGGTTTTGCGTGGGAAGGTGAGGGTCTAGGGAAGCTGGTGTTCTGCGGAGGAGGGGATCGGGAGATGAGTTATAGTTTGGAGGATCTGCTGAAAGCATCGGCGGAGACATTGGGGAGGGGTATTATGGGAAGCACGTATAAGGCAGTGATGGAATCGGGTTTCATAGTTACTGTGAAGAGGTTGAAAGATGCAAGGTACCCTGGGTTGGAGGAGTTCAGGACTCAGATTGAAGTCCTTGGAAGGCTCACCCACCCTAACCTGGTCCCACTTAGGGCTTATTTCCAGGCTAAGGAGGAACGCCTTCTCGTTTATGATTACTTTCCTAATGGCAGCCTCTTCTCCCTTATTCACGGATCAAAAACATCTGGTGGGGGAAAGCCTCTTCACTGGACATCCTGCCTTAAAATTGCCGAAGATCTAGCAACAGGCCTGCTATATATCCACCAGAGCCCGGGCATGACACATGGAAACCTTAAATCTTCAAATGTGTTGTTGGGTTCTGACTTTGAGTCATGTCTTACTGATTATGGCCTCACTGTGTTCCTCAATCCTGACTCAATGGAAGAGCCTAGTGCCACTTCTTTATTCTACAGAGCACCCGAATGCCGCAACTTTCAAAGGTCACAAACTCAACCAGCTGATGTTTACAGTTTCGGGGTCCTTCTTCTTGAGCTTCTAACTGGCAAAACACCCTTCCAAGATCTTGTTCAGACATACGGTTCAGACATACCTAGATGGGTTCGGTCGGTGCGCGAAGAAGAGACAGAGTCCGGGGACGATCCTGCCTCAGGCAATGAAACATCCGAGGAGAAGCTTCAGGCTCTTTTGAACATTGCAATGGCATGTGTTTCACTAGTGCCGGAAAATAGACCTACAATGAGACAAGTTTTGAAGATGATAAGAGATGCAAGAGGAGAGGCTCATGTCTCATCTAACAGTAGTGATCACTCCCCTGGTAGATGGTCAGATACTGTTCAAAGCTTTCCAAGGGAAGAACACCAGAGCATATGA 1998 0.4955 MERRSYDVFVFLLVSVVCLFLSQPARSEDDSKPLLALKSSIDVHHKLPWREGTDVCTWLGVRDCFNGRVRKLVLEHSNLTGTLDSKILNRLDQLRVLSFKANSLSGQIPNLSTLVNLKSIFLNENNFSGEFPASVALLHRVKVIILSQNHISGNIPASLLNLRRLYVLYLQDNAFTGRIPGFNQSSLRYLNVSNNRLSGEIPVSPALIRFNASSFSGNPGLCGEQIEQACKNGSGSLAPSISPSYPLLPGGTITTTTTGKTNRTKLIKIIGGTVGGVVLVIVCMVMVWAICKKRKTRSKGGADVAEGEGEGGDNNINSNKQQQGGGGGGGFAWEGEGLGKLVFCGGGDREMSYSLEDLLKASAETLGRGIMGSTYKAVMESGFIVTVKRLKDARYPGLEEFRTQIEVLGRLTHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTSGGGKPLHWTSCLKIAEDLATGLLYIHQSPGMTHGNLKSSNVLLGSDFESCLTDYGLTVFLNPDSMEEPSATSLFYRAPECRNFQRSQTQPADVYSFGVLLLELLTGKTPFQDLVQTYGSDIPRWVRSVREEETESGDDPASGNETSEEKLQALLNIAMACVSLVPENRPTMRQVLKMIRDARGEAHVSSNSSDHSPGRWSDTVQSFPREEHQSI 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0296 665 MobiDBLite consensus disorder prediction 636 665 - -
Aed5g0296 665 Gene3D Ribonuclease Inhibitor 27 183 IPR032675 -
Aed5g0296 665 SUPERFAMILY Protein kinase-like (PK-like) 364 640 IPR011009 -
Aed5g0296 665 Pfam Protein kinase domain 363 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0296 665 ProSiteProfiles Leucine-rich repeat profile. 186 208 IPR001611 GO:0005515
Aed5g0296 665 Gene3D Transferase(Phosphotransferase) domain 1 436 652 - -
Aed5g0296 665 ProSiteProfiles Protein kinase domain profile. 360 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0296 665 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 29 653 - -
Aed5g0296 665 Gene3D Ribonuclease Inhibitor 184 233 IPR032675 -
Aed5g0296 665 MobiDBLite consensus disorder prediction 639 665 - -
Aed5g0296 665 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 29 653 - -
Aed5g0296 665 SUPERFAMILY L domain-like 54 223 - -
Aed5g0296 665 MobiDBLite consensus disorder prediction 300 329 - -
Aed5g0296 665 Gene3D Phosphorylase Kinase; domain 1 347 435 - -
Aed5g0296 665 Pfam Leucine rich repeat N-terminal domain 28 62 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0296 Aed-Chr5 2045248 2050092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0296 16 665 Receptor kinase-like Gene Family AT1G60630 60.486 0.0 767
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aed5g0296 Pkinase 2.5e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0296 - - gmx:100809866 1099.73