Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0292 ATGGCATCGGCGTTCGTGAAGCTCGATGATTCCCCTATGTTCCAGAAACAGTTATATTCTCTTGAAGAAACAACTGATGAGCTAAAGGATCGGTGCCAGAAACTATTTAAAGGGTGTAAGAAGTATATGACAGCTTTGGGGGATGCATATAATGGAGAATTAGCCTTTTCTGATTCATTAGAAGTATTTGGTGGTGGCCAAGATGACCCTGTCAGTGTATCAATTGGAGGGCCCGTCATATCTAAGTTTATTACTACACTGCGTGAGCTAGCTTCTTGTAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGATTGACCGGCTATCAGAGTTTATGAACGTTGATATGCAGGATGCAATGGATTCTCGTCGCCGTTTTGACAAAGCTGTGCATTCTTATGATCAGTCACGGGAGAAGTTTGTCTCTTTGAAGAAGAATACATCGGAAGATGTTGTTGCTGAATTAGAAGAGGATCTCCAAAATTCAAAATCAGCATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCTCTCATGAATATTGAAGTGAAAAAGAAATACGAGTTCTTGGAGTCCATTAGTGCAATAATGGATGCTCATTTGAGATATTTTAAACTGGGTTATGACTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTGCTAACATATGCACAGCAATCAAAAGAACTTGCCAATATTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATACAGAACACAGGCAGAGCTCGAGAATATAAAAGCTTCTAGCAAATATACAGAAACCATTCCAGGTTCTGATGGCACCCATGTTGTAGGTTTGAGCTCTTACAGAAGTTTTGAAGCAGGGGTTCAAACGGTTAAACAGGGTTATCTGTTAAAACGATCATCAGGCTCACGTGGAGATTGGAAACGGAGGTTCTTTGTACTAGATAACCAAGGAAATTTATATTATTACAGAGTGAAGGGTGTCAAACCCATGGGCTCTCAGTCATATAACTATACTCGCCCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTTCGTGCAAGACACATCAGGGCTGCATCTCTTAATGATGATATTTTAGGTTGTTGTACAGTTGATCTGTGCACATCCACTATAAAGATGGATGCAGACGATACAGATCTACGTCTTTGCTTCCGAATAATTTCTCCCTCAAAAACATACACACTACAGGCCGAAAATGAAGCTGATAGGATGGACTGGGTAAACAAAATAACTGGAGCTATCACGTCACTTTTTAATTCTCAGTTTCTTCAACAGCCTCAATATGGTAGAGTGCATTCACAGAATAGAAACTCAGCAACTGGTGCTTCTTTGGCAAGTAAATCAGAGAATAGTCAGAAATCATTGAGGGATGATGGATATTCCAAGGAAGTGGGTAGTGTCTCTAAGACTTTAAGGGGAATTCCAGGGAATGATAAATGTGCTGAGTGCAGTGCTCTTGAACCGGACTGGGCATCTCTAAACCTTGGCATATTGCTGTGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATGTCTCAAAGGTGAGATCTATAACATTAGATGTTAGGGTTTGGGACAATACCGTTCTAGGGTTATTTGATAACTTGGGTAATGCTTATTGTAATTCTATCTGGGAGGGCTTGCTTCTACTTGATCATGAGGGGGTAGATGAATCAAATGTGCCTATGAAACCTTGCTCTACAGATGCCTTCCAACACAAGGAAAAGTACATCCAAGCAAAGTACGTAGAGAAATCACTAATCATCCAAGAAAAGGATATACCTGAGAATCCTTCAGTTTGCATGAGAATCTGGCAAGCAGTTGAAGCTGTAAATATACGAGAAGTGTATCGCCTTATTGTCACATCAACATCAAATCTGATAAACACAAAATATTATGATGAGGTTCAGGATCAGCAGCATGATCCTGAAGCCTGTCTGCAAGTTGTAGAGACTCCTGAGACAGAGAGGTGTTTCCGTGGATGGTCAATATTACATCTGGCATGTCATTCTGGCAGTGCACTGATGATTGAGTTGTTGCTCCAATTTGGTGCTGATGTAAACATGTGTGACTATCATGGAAGAACTCCCTTGCACCATTGCATTACAAGTGGGAAAAATCAATTGGCAAAGTTTCTATTAAGAAGGGGTGCAAAGCCGTCAGTTACAGATGCTGGAGGACTCACTATACTTGAAAGAGCAATGGAAAAGGGAGCAATAACTGACGAAGAGCTATTTATTTTGCTTGCTGGATGCCAGTGA 2286 0.4064 MASAFVKLDDSPMFQKQLYSLEETTDELKDRCQKLFKGCKKYMTALGDAYNGELAFSDSLEVFGGGQDDPVSVSIGGPVISKFITTLRELASCKELLRSQVEHVLIDRLSEFMNVDMQDAMDSRRRFDKAVHSYDQSREKFVSLKKNTSEDVVAELEEDLQNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELENIKASSKYTETIPGSDGTHVVGLSSYRSFEAGVQTVKQGYLLKRSSGSRGDWKRRFFVLDNQGNLYYYRVKGVKPMGSQSYNYTRPSEQNSGMFGRFRARHIRAASLNDDILGCCTVDLCTSTIKMDADDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPQYGRVHSQNRNSATGASLASKSENSQKSLRDDGYSKEVGSVSKTLRGIPGNDKCAECSALEPDWASLNLGILLCIECSGVHRNLGVHVSKVRSITLDVRVWDNTVLGLFDNLGNAYCNSIWEGLLLLDHEGVDESNVPMKPCSTDAFQHKEKYIQAKYVEKSLIIQEKDIPENPSVCMRIWQAVEAVNIREVYRLIVTSTSNLINTKYYDEVQDQQHDPEACLQVVETPETERCFRGWSILHLACHSGSALMIELLLQFGADVNMCDYHGRTPLHHCITSGKNQLAKFLLRRGAKPSVTDAGGLTILERAMEKGAITDEELFILLAGCQ 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0292 761 Coils Coil 146 166 - -
Aed5g0292 761 SMART ANK_2a 668 697 IPR002110 GO:0005515
Aed5g0292 761 SMART ANK_2a 701 730 IPR002110 GO:0005515
Aed5g0292 761 Gene3D - 284 438 IPR011993 -
Aed5g0292 761 SMART PH_update 288 423 IPR001849 -
Aed5g0292 761 CDD ArfGap 477 590 - -
Aed5g0292 761 ProSiteProfiles BAR domain profile. 3 227 IPR004148 GO:0005515|GO:0005737
Aed5g0292 761 ProSiteProfiles Ankyrin repeat profile. 668 700 IPR002110 GO:0005515
Aed5g0292 761 Pfam Putative GTPase activating protein for Arf 474 596 IPR001164 GO:0005096
Aed5g0292 761 Gene3D - 609 752 IPR036770 -
Aed5g0292 761 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 757 - -
Aed5g0292 761 Pfam BAR domain of APPL family 8 230 - -
Aed5g0292 761 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Aed5g0292 761 SUPERFAMILY ArfGap/RecO-like zinc finger 474 595 IPR037278 -
Aed5g0292 761 PRINTS HIV Rev interacting protein signature 502 519 IPR001164 GO:0005096
Aed5g0292 761 PRINTS HIV Rev interacting protein signature 483 502 IPR001164 GO:0005096
Aed5g0292 761 ProSiteProfiles PH domain profile. 287 421 IPR001849 -
Aed5g0292 761 MobiDBLite consensus disorder prediction 435 468 - -
Aed5g0292 761 Gene3D Arf GTPase activating protein 451 603 IPR038508 -
Aed5g0292 761 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Aed5g0292 761 ProSiteProfiles Ankyrin repeat region circular profile. 668 699 - -
Aed5g0292 761 SUPERFAMILY BAR/IMD domain-like 8 310 IPR027267 -
Aed5g0292 761 SMART arf_gap_3 471 603 IPR001164 GO:0005096
Aed5g0292 761 Pfam PH domain 289 420 IPR001849 -
Aed5g0292 761 CDD PH_ACAP 290 425 - -
Aed5g0292 761 ProSiteProfiles Ankyrin repeat profile. 701 733 IPR002110 GO:0005515
Aed5g0292 761 CDD BAR_SFC_plant 16 217 IPR035670 -
Aed5g0292 761 SUPERFAMILY PH domain-like 288 435 - -
Aed5g0292 761 ProSiteProfiles Ankyrin repeat region circular profile. 701 732 - -
Aed5g0292 761 Pfam Ankyrin repeats (3 copies) 664 732 IPR002110 GO:0005515
Aed5g0292 761 SUPERFAMILY Ankyrin repeat 664 753 IPR036770 -
Aed5g0292 761 MobiDBLite consensus disorder prediction 435 456 - -
Aed5g0292 761 Coils Coil 229 249 - -
Aed5g0292 761 PANTHER CENTAURIN/ARF 3 757 IPR045258 GO:0005096
Aed5g0292 761 ProSiteProfiles ARF GTPase-activating proteins domain profile. 471 603 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0292 Aed-Chr5 2016198 2029246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0292 481 601 C2H2 Transcription Factor Family AT3G07940 42.623 9.48e-19 85.5