LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g0287	ATGGCTCCCAAACGAGGTGGAAAGGCTCCGGCTCTTGCCACTAAGAAGAAGACCGAGAAGGTTACGAATCCATTGTTCGAGAAGCGTCCGAAGCAGTTCGGAATCGGAGGAGCCTTGCCTCCGAAGAGAGACTTGACTCGGTTTGTGAAGTGGCCGAAGAATGTTCAGATTCAGAGGAAGAAGAGGATTCTGAAGCAGAGGTTGAAGGTTCCTCCAGCTTTGAACCAGTTTACCAAAACTCTTGATAAAAATTTAGCAACAAGTCTGTTCAAGTTGCTTCTGAAGTACAGGCCTGAGGATAAAGCAGAAAAGAAGGAGAGGCTCTTGAAAAGGGCTCAGGCTGAGGCTGAAGGCAAAACTGTTGAAGCGAAGAAGCCTATCAATGTGAAGTATGGTCTCAATCATGTTACCTACCTCATTGAGCAGAACAAAGCACAGCTTGTTGTGATTGCTCATGATGTGGACCCAATTGAATTGGTTGTCTGGCTTCCAGCGCTGTGCAGGAAGATGGAAATTCCATACTGCATTGTGAAAGGAAAGGCCCGCTTGGGAACGGTTGTCCATAAGAAAACTGCTTCCGTCTTGTGCCTGACCACTGTTAAGAATGAAGATAAATTGGAGTTCAGCAGAGTCTTGGAGGCTATCAAGGCTAACTTCAATGACAAATATGATGAGTACAGAAAGAAGTGGGGTGGTGGAATCATGGGATCCAAATCCCAAGCCAAGACCAAGGCAAAGGAAAAGCTTATTGCCAAGGAAGCTGCTCAGAGGTTGAATTAG	780	0.4615	MAPKRGGKAPALATKKKTEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKNVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKLLLKYRPEDKAEKKERLLKRAQAEAEGKTVEAKKPINVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTVVHKKTASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTKAKEKLIAKEAAQRLN	259

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g0287	259	PRINTS	Ribosomal protein L7A/RS6 family signature	129	143	IPR018492	-
	Aed5g0287	259	PRINTS	Ribosomal protein L7A/RS6 family signature	164	174	IPR018492	-
	Aed5g0287	259	PRINTS	Ribosomal protein L7A/RS6 family signature	148	161	IPR018492	-
	Aed5g0287	259	PRINTS	Ribosomal protein L7A/RS6 family signature	174	188	IPR018492	-
	Aed5g0287	259	Gene3D	-	51	234	IPR029064	-
	Aed5g0287	259	PRINTS	Ribosomal protein L7A family signature	91	104	IPR001921	-
	Aed5g0287	259	PRINTS	Ribosomal protein L7A family signature	218	238	IPR001921	-
	Aed5g0287	259	PRINTS	Ribosomal protein L7A family signature	30	47	IPR001921	-
	Aed5g0287	259	PRINTS	Ribosomal protein L7A family signature	47	64	IPR001921	-
	Aed5g0287	259	PRINTS	Ribosomal protein L7A family signature	125	145	IPR001921	-
	Aed5g0287	259	PRINTS	Ribosomal protein L7A family signature	186	210	IPR001921	-
	Aed5g0287	259	PRINTS	Ribosomal protein L7A family signature	67	86	IPR001921	-
	Aed5g0287	259	Coils	Coil	102	122	-	-
	Aed5g0287	259	SUPERFAMILY	L30e-like	89	230	IPR029064	-
	Aed5g0287	259	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	2	257	-	-
	Aed5g0287	259	ProSitePatterns	Ribosomal protein L7Ae signature.	167	184	IPR004037	GO:0042254\|GO:1990904
	Aed5g0287	259	Pfam	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	116	206	IPR004038	-
	Aed5g0287	259	PANTHER	BNAA03G47020D PROTEIN	2	257	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g0287	Aed-Chr5	1979401	1981525	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed5g0287	1	259	Cytoplasmic Ribosomal Protein Gene Family	AT3G62870	85.328	9.14e-167	459

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g0287	K02936		-	gmx:100775472	488.419