Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0284 ATGCAACAGCAGAACCACTCTGCACTGGTGCCACCACAGCTCAAGAATCCCCAATCCTCCTCCGCCACGGTCACCACCGCCGCCACTTCCATTAGGTCACCCTCCGCCCAGTCGCCGCTCTCCGCCGTCCCTCCCCTCCGGCAACCCCCACTCTCCTCGCATCCGGTGTCGGTTACTGCGGTGGAGCATGCTTTGACGGCGGTGCCGACGTGTCCGCTGGTGAGAGTGCGGCTCTCGGACATTTCCCCCTATGACGGAGCACCGGCGGGGCCATATCTGAGAGCAATGGATGCACTGCGTGGGTCTCTGTTGCGGCACAATGCTGCGTTGATCGAATTGGGGAGCGAAGACACTGCTCTGATGCGATGCGGCTTGGAAGCTGCGAGGGCTTTGGAGGATTGGGATTCTTCTCCGCCTTGCACTGCTGATATTTTTAGGTGCATGGGAAAGGCGTCTCGATCCGCCTTGTGTGCCATTGCGAGGCATTTGCGTCTTAGAAGCGATGTTTTTAACCATTTGCTTGATGATGCTCCATTGCCTGCTAATGAGGTGTCTTCGTCAGTTCTTGTTGTGACCTACTCACATGCTTCTTTGCAAAATGGAAGAGGTGCCATTGGAGGCGGTAAGCCTACCATGAATGGTGAAGTTGAGAAGGGATTGTTGACGTTGATATCTTCTGACACTCCTGGTCTTCAGGTATGTGATCCCAGTGGTCGCTGGTATCTGGCTGACAGTGGGTCTGGACCTGGAGATCTTTTACTGATAACAGGCAAGGCACTTAGCCACACCACTGCTGGCCTATGTCCTGCTGCATCATATAGAGCTTCTCCTGATTACTTTCCGAGTCCTAATGGTGGAGGAAGGACTTCTCTTGCATATAGACTCATGCCACAGGGAAATGCTATATTAGATTGTTCCCCAATTGCAGCAGCTGGCCATGTTATTCCCCAAAGCTATGTTCGAATATCTGTAAGCCAATTTATGGATGACCTTGCTGCTGAAGAACTGATAGGCAGCAGATGTGATAATGCTGATGTTGCTGCTCAAAACAATGTGAATAAGGAGCCATCATTAAGAAGTGTTCTATCAGATTCTTTATCTGGCACATTCCTTGAAGATGCCATGCTTGTCTCATGCGGACATTCTTTTGGTGGTCTCATGCTTAGGAGAGTTGTTGAAACGTCAAGATGTACTCTCTGCAATGCAGAAATTGAAACTGGTTCTTTGATCCCTAATCTTGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGATGACCGGAGATTATTTCGTAATGCTGCTCTCCGAAAGCGGCGGAAAGAAATGGGTGACCCAATGGATTCAATTAGAAGAGTGAATAGGCGGGGTGTACAATATCCGTTTTCGGTAAATGAGAAAGTTGTTATTAAGGGTAACAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCTCTGATTACATCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGAAACTGGAGAGAATGTCAGGCTGCAGTACCGTTCTCTTAGGAAGCTCTTAAACTCACCAGCGGACCAGTGTTCCTCACAGCCAATTCAAAATAGCAGCTCTTAA 1608 0.4925 MQQQNHSALVPPQLKNPQSSSATVTTAATSIRSPSAQSPLSAVPPLRQPPLSSHPVSVTAVEHALTAVPTCPLVRVRLSDISPYDGAPAGPYLRAMDALRGSLLRHNAALIELGSEDTALMRCGLEAARALEDWDSSPPCTADIFRCMGKASRSALCAIARHLRLRSDVFNHLLDDAPLPANEVSSSVLVVTYSHASLQNGRGAIGGGKPTMNGEVEKGLLTLISSDTPGLQVCDPSGRWYLADSGSGPGDLLLITGKALSHTTAGLCPAASYRASPDYFPSPNGGGRTSLAYRLMPQGNAILDCSPIAAAGHVIPQSYVRISVSQFMDDLAAEELIGSRCDNADVAAQNNVNKEPSLRSVLSDSLSGTFLEDAMLVSCGHSFGGLMLRRVVETSRCTLCNAEIETGSLIPNLALRAAAAAVKHEDDRRLFRNAALRKRRKEMGDPMDSIRRVNRRGVQYPFSVNEKVVIKGNRRTPEKFVGKEALITSQCLNGWYLLKIIETGENVRLQYRSLRKLLNSPADQCSSQPIQNSSS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0284 535 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 68 533 - -
Aed5g0284 535 Gene3D - 118 333 IPR027443 -
Aed5g0284 535 SUPERFAMILY RING/U-box 358 424 - -
Aed5g0284 535 MobiDBLite consensus disorder prediction 1 42 - -
Aed5g0284 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 357 426 IPR013083 -
Aed5g0284 535 MobiDBLite consensus disorder prediction 1 54 - -
Aed5g0284 535 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 68 533 - -
Aed5g0284 535 SUPERFAMILY Clavaminate synthase-like 218 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0284 Aed-Chr5 1951627 1957522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0284 358 522 Plant U-box Gene Family AT5G05230 40.351 1.76e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0284 - - gmx:100807199 930.628