LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed5g0284	ATGCAACAGCAGAACCACTCTGCACTGGTGCCACCACAGCTCAAGAATCCCCAATCCTCCTCCGCCACGGTCACCACCGCCGCCACTTCCATTAGGTCACCCTCCGCCCAGTCGCCGCTCTCCGCCGTCCCTCCCCTCCGGCAACCCCCACTCTCCTCGCATCCGGTGTCGGTTACTGCGGTGGAGCATGCTTTGACGGCGGTGCCGACGTGTCCGCTGGTGAGAGTGCGGCTCTCGGACATTTCCCCCTATGACGGAGCACCGGCGGGGCCATATCTGAGAGCAATGGATGCACTGCGTGGGTCTCTGTTGCGGCACAATGCTGCGTTGATCGAATTGGGGAGCGAAGACACTGCTCTGATGCGATGCGGCTTGGAAGCTGCGAGGGCTTTGGAGGATTGGGATTCTTCTCCGCCTTGCACTGCTGATATTTTTAGGTGCATGGGAAAGGCGTCTCGATCCGCCTTGTGTGCCATTGCGAGGCATTTGCGTCTTAGAAGCGATGTTTTTAACCATTTGCTTGATGATGCTCCATTGCCTGCTAATGAGGTGTCTTCGTCAGTTCTTGTTGTGACCTACTCACATGCTTCTTTGCAAAATGGAAGAGGTGCCATTGGAGGCGGTAAGCCTACCATGAATGGTGAAGTTGAGAAGGGATTGTTGACGTTGATATCTTCTGACACTCCTGGTCTTCAGGTATGTGATCCCAGTGGTCGCTGGTATCTGGCTGACAGTGGGTCTGGACCTGGAGATCTTTTACTGATAACAGGCAAGGCACTTAGCCACACCACTGCTGGCCTATGTCCTGCTGCATCATATAGAGCTTCTCCTGATTACTTTCCGAGTCCTAATGGTGGAGGAAGGACTTCTCTTGCATATAGACTCATGCCACAGGGAAATGCTATATTAGATTGTTCCCCAATTGCAGCAGCTGGCCATGTTATTCCCCAAAGCTATGTTCGAATATCTGTAAGCCAATTTATGGATGACCTTGCTGCTGAAGAACTGATAGGCAGCAGATGTGATAATGCTGATGTTGCTGCTCAAAACAATGTGAATAAGGAGCCATCATTAAGAAGTGTTCTATCAGATTCTTTATCTGGCACATTCCTTGAAGATGCCATGCTTGTCTCATGCGGACATTCTTTTGGTGGTCTCATGCTTAGGAGAGTTGTTGAAACGTCAAGATGTACTCTCTGCAATGCAGAAATTGAAACTGGTTCTTTGATCCCTAATCTTGCTCTTAGAGCTGCAGCTGCTGCTGTCAAGCATGAGGATGACCGGAGATTATTTCGTAATGCTGCTCTCCGAAAGCGGCGGAAAGAAATGGGTGACCCAATGGATTCAATTAGAAGAGTGAATAGGCGGGGTGTACAATATCCGTTTTCGGTAAATGAGAAAGTTGTTATTAAGGGTAACAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCTCTGATTACATCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGAAACTGGAGAGAATGTCAGGCTGCAGTACCGTTCTCTTAGGAAGCTCTTAAACTCACCAGCGGACCAGTGTTCCTCACAGCCAATTCAAAATAGCAGCTCTTAA	1608	0.4925	MQQQNHSALVPPQLKNPQSSSATVTTAATSIRSPSAQSPLSAVPPLRQPPLSSHPVSVTAVEHALTAVPTCPLVRVRLSDISPYDGAPAGPYLRAMDALRGSLLRHNAALIELGSEDTALMRCGLEAARALEDWDSSPPCTADIFRCMGKASRSALCAIARHLRLRSDVFNHLLDDAPLPANEVSSSVLVVTYSHASLQNGRGAIGGGKPTMNGEVEKGLLTLISSDTPGLQVCDPSGRWYLADSGSGPGDLLLITGKALSHTTAGLCPAASYRASPDYFPSPNGGGRTSLAYRLMPQGNAILDCSPIAAAGHVIPQSYVRISVSQFMDDLAAEELIGSRCDNADVAAQNNVNKEPSLRSVLSDSLSGTFLEDAMLVSCGHSFGGLMLRRVVETSRCTLCNAEIETGSLIPNLALRAAAAAVKHEDDRRLFRNAALRKRRKEMGDPMDSIRRVNRRGVQYPFSVNEKVVIKGNRRTPEKFVGKEALITSQCLNGWYLLKIIETGENVRLQYRSLRKLLNSPADQCSSQPIQNSSS	535

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed5g0284	535	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED	68	533	-	-
	Aed5g0284	535	Gene3D	-	118	333	IPR027443	-
	Aed5g0284	535	SUPERFAMILY	RING/U-box	358	424	-	-
	Aed5g0284	535	MobiDBLite	consensus disorder prediction	1	42	-	-
	Aed5g0284	535	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	357	426	IPR013083	-
	Aed5g0284	535	MobiDBLite	consensus disorder prediction	1	54	-	-
	Aed5g0284	535	PANTHER	RING/U-BOX SUPERFAMILY PROTEIN	68	533	-	-
	Aed5g0284	535	SUPERFAMILY	Clavaminate synthase-like	218	307	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed5g0284	Aed-Chr5	1951627	1957522	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed5g0284	358	522	Plant U-box Gene Family	AT5G05230	40.351	1.76e-37	140

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed5g0284	-		-	gmx:100807199	930.628

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