Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0274 ATGGGCAAGTCAAGCAAGAAATCAGCTCTCAAGGTTGAGGCTTCTCCAGCCGTGGTTTCACCATCAAAGTCTGCCAAGAAGGGTGGCAAGAGACAAGCGGAGGAAATTGAGAAGCAAGTGAGTCTGAAAAAACAGAAAATAGAGGAGGTTTCTCAGAAGCAAAAGAAAGAGGCGAAGGTGCTAAAGAAGAAGGAAAGCAGTTCCGACGATTCTTCTTCGGACTCTGAAGATGAGAAACCTGCACCTAAACCTGCTGTTATTTCAAAAAAGATACCAGCTAAGAATGGTGCTGCACCAGCAAAGAAAGGCAAGCCAGTTTCCAGTTCCTCTGAATCATCTGATGAGGACTCCTCTGACGAGGATGAAAAGCCTGCCCAAAAAGTTGCTGCTCCTCTGAAAAAGGCACCTGCTAAAAATGGTAATCTAAGTAACCCAGCAAAGAAAAGCAAACCAGCTAGCAGCTCCAGTTCTTCTGAATCATCTGATGATGATTCTTCTGATGATGATCTTGTTGCTACCAAAAATCAAACGAAAGAACTGGTTGCTGCAAAGCAAAATCAGGAAGCGAATGTGCAAAAGAGAAAGGAGGAAAGTAGTTCAGATGATTCTTCATCTGAATCTGAAGATGAGAAACATGCTCCAAAAGGTGCCGCTCCTCCAAAAACTCAATCTGCCAAAAATGGTACTCTAAGTACTGCAGCAAAGAATAGCAAGCCAGCTGCCAGTTCAAGCTCTTCTGATGACGACTCTGATGAGGATGAGGCTCCAAAATCCAAAGTTGCCCCTGCTGCAGGCAAGAATGTGCCTGCTTCTACAAAGAAAACTCAGCCAATTGAGAACTCTGACAGTGATGAATCTGATTCTGATAGCAGCTCTGATGAGGACAAAAATAAGAAAAAACCTGCAACTGCAAAGCTGCCTGCAGTGTCAGTTGCTCCAGTTAAGAAAGTGGAAAGCTCAGATGATGAATCAAGTGAAAGTTCTGATGAAGAAAATGATGCAAAGCCTGCTGTAACTGCTGAGGCAAAGCCTTCTACTGTTGCAAAAAAGGACAGCTCTGATTCTGATGATAGCAGCTCTGATGCGGTCGAAGATGATAGTTCTGATGAAGAGCCACAAAAGAAGAATGTGAAAAACTCTAAAGAAAGCAGTGATAGTTCTGAAGATAGTGATGATGAAAGTGAGGAAAAACCCTCCAAAACTCCTCAGAAAAGAGATAGGGATGTGGAAATGGTTGATGCTGCCTCGTCTGGAAAGAAAGCTCCTAAAACCCCAGTTACACCAAAAGAAGAAATTGGGGCTTCAAAGACACTATTTGTTGGGAACTTGGCATTTAGTGTTGAGCAAGTTGATGTGGAAAATTTCTTCAAGAGTTGTGGAGAAATTGTTGATGTTCGTTTTTCTGTGGATGATACTGGGAAATTTAAAGGATTTGCGCATGTTGAGTTTGCAACAGCTGAGGCTGCCCAAAATGCTCTTAAGTTGAATGGACACGAACTTCTTGATCGTGCACTCCGTCTTGATTTAGCTCGGCCAAGGGGGGATGCATTTACCCCCAATAGCGGGTTCTCATCCCAGAGAGGTGGAAGGGGTCAGTCTCAAACAGTATATGTAAGGGGTTTTGATACATCCCTTGGTGAAGATGAGATAAGAGGGAGTTTGCAAGAACATTTTGGTTCCTGTGGGGACATTACCAGGTTATCAATTCCTAAAGATTACGAGTCTGGTTCTGTTAAGGGGTTTGCTTACTTGGACTTCAGTGATGCTGATGGTATGGGCAAAGCTCTAGAACTCCATGAAACTGAACTTGGAGGGTATCCTTTAACAGTGAATGAAGCCAAACCTAGAGATAGCCAAGGTTCTGGTGGCCGTGGATTTGGTGGAAGGAGCGGTGGCCGGGGTTTTGGTGGGAGGAGTGGTGGTGGTGGATTTGGTGGAAGGAACAGTGGTGGTGGATTTGGTGGAAGGAGTGGTGGTGGATTTGGTGGACGGGGTGGTGGCCGAGGAAGAGGAGGTGGTGGAAGGGGTCGTGGACCAAATAGACCCAATCTTGCTGCGGAAGGCACAGGGAAAAGGACCAAATTTGCGGATGACGAGTAG 2100 0.4505 MGKSSKKSALKVEASPAVVSPSKSAKKGGKRQAEEIEKQVSLKKQKIEEVSQKQKKEAKVLKKKESSSDDSSSDSEDEKPAPKPAVISKKIPAKNGAAPAKKGKPVSSSSESSDEDSSDEDEKPAQKVAAPLKKAPAKNGNLSNPAKKSKPASSSSSSESSDDDSSDDDLVATKNQTKELVAAKQNQEANVQKRKEESSSDDSSSESEDEKHAPKGAAPPKTQSAKNGTLSTAAKNSKPAASSSSSDDDSDEDEAPKSKVAPAAGKNVPASTKKTQPIENSDSDESDSDSSSDEDKNKKKPATAKLPAVSVAPVKKVESSDDESSESSDEENDAKPAVTAEAKPSTVAKKDSSDSDDSSSDAVEDDSSDEEPQKKNVKNSKESSDSSEDSDDESEEKPSKTPQKRDRDVEMVDAASSGKKAPKTPVTPKEEIGASKTLFVGNLAFSVEQVDVENFFKSCGEIVDVRFSVDDTGKFKGFAHVEFATAEAAQNALKLNGHELLDRALRLDLARPRGDAFTPNSGFSSQRGGRGQSQTVYVRGFDTSLGEDEIRGSLQEHFGSCGDITRLSIPKDYESGSVKGFAYLDFSDADGMGKALELHETELGGYPLTVNEAKPRDSQGSGGRGFGGRSGGRGFGGRSGGGGFGGRNSGGGFGGRSGGGFGGRGGGRGRGGGGRGRGPNRPNLAAEGTGKRTKFADDE 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0274 699 SUPERFAMILY RNA-binding domain, RBD 533 645 IPR035979 GO:0003676
Aed5g0274 699 MobiDBLite consensus disorder prediction 368 385 - -
Aed5g0274 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 438 506 IPR000504 GO:0003723
Aed5g0274 699 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 536 608 IPR000504 GO:0003723
Aed5g0274 699 MobiDBLite consensus disorder prediction 27 84 - -
Aed5g0274 699 SMART rrm1_1 535 611 IPR000504 GO:0003723
Aed5g0274 699 SMART rrm1_1 437 508 IPR000504 GO:0003723
Aed5g0274 699 Gene3D - 427 517 IPR012677 -
Aed5g0274 699 MobiDBLite consensus disorder prediction 393 414 - -
Aed5g0274 699 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 280 618 - -
Aed5g0274 699 MobiDBLite consensus disorder prediction 1 429 - -
Aed5g0274 699 MobiDBLite consensus disorder prediction 142 160 - -
Aed5g0274 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 534 615 IPR000504 GO:0003723
Aed5g0274 699 Gene3D - 518 634 IPR012677 -
Aed5g0274 699 Coils Coil 33 64 - -
Aed5g0274 699 MobiDBLite consensus disorder prediction 189 216 - -
Aed5g0274 699 PANTHER BNAA08G02930D PROTEIN 280 618 - -
Aed5g0274 699 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 436 512 IPR000504 GO:0003723
Aed5g0274 699 SUPERFAMILY RNA-binding domain, RBD 427 532 IPR035979 GO:0003676
Aed5g0274 699 MobiDBLite consensus disorder prediction 222 244 - -
Aed5g0274 699 MobiDBLite consensus disorder prediction 608 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0274 Aed-Chr5 1896901 1901922 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0274 438 597 Eukaryotic Initiation Factors Gene Family AT4G34110 31.902 1.65e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0274 K11294 - gmx:100779929 679.093