Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0273 ATGTACTTGCGGAGAATACAGTGCAGAGATCGGACATGGGCTTTGGTGTTGCAGCCATTGAAATACTTCTTTAGGCCAAGATTCTCTGATCATCGATATTTTCAATCTTTGTCCCCTAAGATCACTGTTGAAGAATATGCTTCACATGGCAGGATCATTAGAAAACATCTTTTAGGTTTAGATTCATGTAGGCATACTTCATCTAGAAATAGATTCAGTGGTCTAGACAGAAGGCCTAGTTTATGTCTTAACAGTTCTCAGTTACGTGCCTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAACATGTACATGTTAATGATGGAGCTAACTTTGATAAAGGACAGAAACAAGAGAAGTTTGGGAAAGATGTCAAGTACAGCAATGCACATGCATGGCTTGGATTTCAGGAACAAGAGGAATGGCTTAATAATGAGAAGCTTTCTATAGAAAGTAAAAGGAGTGAATCACCATTTTTGACAAGAAGGGATAAGTTTAAAAAAGAGTTTATGAGAAGAATTATTCCATGGGAGAAGATAAACATTTCCTGGGACAAGTTTCCTTATCACATTCATGAGAATACCAAAAATCTTCTGGTGGAATGTGCTGCTTCCCATTTGAGACATAATAAGCTTGCTTCATCTTTTGGCACTCGTCTCACATCTTCAAGTGGGAGAATATTGCTTCAGAGCATTCCTGGAACTGAGCTGTATCGTGAGAGATTGGTTAGGGCTCTTGCACAAGAATTACAAGTTCCTCTGTTAATGCTTGATAACAACATTCTTGCTCCTTATGATATTGATGATGATTTATCATCAGATTACGAGTCTGATGACGATAATGCAGAGTCTGGGGAGGAGGGTTCTCTGGAATCAGAGAATGAGGATGATAATGATGCTACAAATGAAGAAGAGTGGGCTAGCAGTACTGAGGCAAAGTCAGATGCAAGTGATAATGAAGATGCAGTAGCGGCTGCTGAAGCACACCTTAAGAAGGTTAAAGCAGCTGTTCTTCGGAAACTTGTTCCTTACAATGTTGAAGAATTTGAAAAGATAGTGTCTGGAGAATCTGAGAATCCTGAGTCATCCAAGTCTGATGATGTCAAATCTTCTGATAAATCTGGATGCCAGCTAAGAAAAGGTGACCGTGTGAAGTACACTGGGCCATCTGTTCAAGTTACAGACGAAGATAGGATCATACTGGGGAAGATACCGACATCTGATGGTACAACTAATGCTTATACTATTATACATGGCAGGCCCTTAACTAAAGGTCAGAGAGGAGAGGTATATGAGGTTAATGGAGATAGAGTTGCTGTCATCTTGGATATTAATGAAGATAGGGTCATTGAGGGTGAGGTGGAGAACCTTAATGATAATCACACAAAACCCCCAATTTATTGGATACATGTTAAGGACATTGAGAATGATCTTGATACTCAATCACATGATTTCTACATAGCAGTGGAGACTTTATGTGAGGTTTTGCATCACAATCAACCTCTTATTGTCTATTTTCCAGACAGTTCACAATGGTTACATAAAGCAGTTCCTAAGTCAAACCGAAATGAGTTTTTTCATAAGGTTGAGGAGATGTTTGACCGGTTATCTGGCCCTGTAGTATTGATTTGTGGGCAAAACAAAGTTCAGTCAGGATCAAAGGAGAAAGAACAATTCACAATGATACTTCCAAACTTTGGACGTGTTGCTAAGCTGCCTCTTTCTCTGAAGCGTTGGACTGAGGGAATTAAAGGGGACAAGACTTCAGAAGATGATGAAATTAACAAGCTTTTTTCTAATGTTTTGAGTATACATCCACCTAAGGATGAGAGTCTGCTGGCAACATTCAAGAAACAACTTGAGGAAGATAAGAAAATTGTGACTTCACGTAGTAATTGGAATGTTCTTGAAGAACATCAGCTATCATGCATGGACCTTTTGCATTTAAGTACTGATGACATCATTTTGACAAAGCATAAAGCTGAAAAAGTGGTAGGCTGGGCAAAAAATCATTACTTGTCATCATGCTTGCTTCCTTCTGTTAAAGGAGAAAGATTGTGCCTACCTCGTGAAAGTCTTGAAATTGCAGTCTCAAGATTGAAGGGCCAGGAAACTATGTCACGGAAGCCTTCTCAAAGCCTCAAGGCATGTAACCTTGCAAAGGATGAGTTTGAGAGCAATTTCATTTCAGCTGTTGTGCCTCCTGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAAGATGTGAAAAAGGCACTTAATGAACTCGTTATTCTTCCAATGAGAAGGCCAGAGCTTTTCTCTCGTGGAAATCTGTTGCGGCCCTGTAAAGGAATATTACTTTTTGGTCCTCCTGGTACTGGGAAAACCCTTCTAGCCAAGGCACTTGCAACTGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCGACGCTTACTTCAAAGGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTTGAACATGAAGCCACTAGAAGAATGAGGAACGAGTTCATGGCAGCTTGGGATGGATTGAGGTCAAAAGAAAACCAAAGAATCCTTATTCTAGGTGCAACTAACAGGCCATTTGACCTTGATGATGCTGTTATTCGTCGCTTACCAAGAAGGATATATGTTGATTTACCAGATGCTGAAAATCGAATGAAGATTTTAAGAATCTTTCTTGCACAAGAAAATTTGCATTCTCATTTTCAGTTTGACAAACTTGCTAACTTGACTGATGGATACTCTGGCAGTGATTTGAAGAACCTCTGCATTGCAGCAGCATATAGACCTGTTCAAGAACTATTAGAAGAAGAGAAAAAGGGAGCCAGTAATGATACAACTTCGGTACTAAGGCCTCTTAATTTAGATGATTTTATTCAGGCAAAATCCAAGGTGGGTGCATCAGTTGCGTATGATGCAACAAGCATGAATGAGTTGAGGAAGTGGAATGACATGTACGGAGAAGGTGGTAGTAGGACAAAATCACCATTTGGATTTGGGACCTGA 3027 0.3987 MYLRRIQCRDRTWALVLQPLKYFFRPRFSDHRYFQSLSPKITVEEYASHGRIIRKHLLGLDSCRHTSSRNRFSGLDRRPSLCLNSSQLRAYSSESDGRNASEDKHVHVNDGANFDKGQKQEKFGKDVKYSNAHAWLGFQEQEEWLNNEKLSIESKRSESPFLTRRDKFKKEFMRRIIPWEKINISWDKFPYHIHENTKNLLVECAASHLRHNKLASSFGTRLTSSSGRILLQSIPGTELYRERLVRALAQELQVPLLMLDNNILAPYDIDDDLSSDYESDDDNAESGEEGSLESENEDDNDATNEEEWASSTEAKSDASDNEDAVAAAEAHLKKVKAAVLRKLVPYNVEEFEKIVSGESENPESSKSDDVKSSDKSGCQLRKGDRVKYTGPSVQVTDEDRIILGKIPTSDGTTNAYTIIHGRPLTKGQRGEVYEVNGDRVAVILDINEDRVIEGEVENLNDNHTKPPIYWIHVKDIENDLDTQSHDFYIAVETLCEVLHHNQPLIVYFPDSSQWLHKAVPKSNRNEFFHKVEEMFDRLSGPVVLICGQNKVQSGSKEKEQFTMILPNFGRVAKLPLSLKRWTEGIKGDKTSEDDEINKLFSNVLSIHPPKDESLLATFKKQLEEDKKIVTSRSNWNVLEEHQLSCMDLLHLSTDDIILTKHKAEKVVGWAKNHYLSSCLLPSVKGERLCLPRESLEIAVSRLKGQETMSRKPSQSLKACNLAKDEFESNFISAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAQENLHSHFQFDKLANLTDGYSGSDLKNLCIAAAYRPVQELLEEEKKGASNDTTSVLRPLNLDDFIQAKSKVGASVAYDATSMNELRKWNDMYGEGGSRTKSPFGFGT 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0273 1008 MobiDBLite consensus disorder prediction 356 386 - -
Aed5g0273 1008 ProSitePatterns AAA-protein family signature. 858 877 IPR003960 GO:0005524|GO:0016887
Aed5g0273 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 741 935 IPR027417 -
Aed5g0273 1008 Gene3D - 887 972 - -
Aed5g0273 1008 SMART AAA_5 779 888 IPR003593 -
Aed5g0273 1008 MobiDBLite consensus disorder prediction 270 323 - -
Aed5g0273 1008 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 820 1006 - -
Aed5g0273 1008 MobiDBLite consensus disorder prediction 308 323 - -
Aed5g0273 1008 Gene3D - 741 819 IPR027417 -
Aed5g0273 1008 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 819 - -
Aed5g0273 1008 Pfam ATPase family associated with various cellular activities (AAA) 783 819 IPR003959 GO:0005524|GO:0016887
Aed5g0273 1008 Pfam ATPase family associated with various cellular activities (AAA) 820 885 IPR003959 GO:0005524|GO:0016887
Aed5g0273 1008 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 819 - -
Aed5g0273 1008 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 820 1006 - -
Aed5g0273 1008 Gene3D - 820 990 IPR027417 -
Aed5g0273 1008 MobiDBLite consensus disorder prediction 96 119 - -
Aed5g0273 1008 MobiDBLite consensus disorder prediction 93 119 - -
Aed5g0273 1008 MobiDBLite consensus disorder prediction 356 382 - -
Aed5g0273 1008 CDD AAA 781 886 - -
Aed5g0273 1008 MobiDBLite consensus disorder prediction 271 306 - -
Aed5g0273 1008 Pfam AAA+ lid domain 910 943 IPR041569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0273 Aed-Chr5 1879429 1895273 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0273 742 946 Calmodulin-binding Proteins AT3G56690 32.627 7.36e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0273 - - gmx:100802939 1739.55