Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0251 ATGGAGTTTGTGGGAAAAACCGTCAGAAAAGAGGTGAAGGATGACGAGTTTATCTCTGGAACAGTGAAATCCTACGACCCTTCCTCTGGTTTTTTCGAGATCGTTTACGAAGATGGTGATTCTGAGGAATTGGAGTCTTCTGACGTGGCTTCTCTTCTGCAATCTCAACAACCGGAGAGTGTCAAGGCCAAGTCCCGCGTTGGTCGGAAACCTAAGAAGCGCCGCCGTGTGGAGCGGAAGCAGGATTCCGGAGCAGGTTCAGGTAATGTTAGCGAGAATTTGGTGGCGGAGGGTAGTGATTTTAGGGGGGTTTTGGATGAGAATGTTTCTTCTGCTGGTGGTGGGGATTTGGATTTAGGGTGTGGGGGATTTGATAGAGCCTTGGATGTTGGAAATGGAGGGAATCCTGTTGAAAATGTTAATGTTAATGGGTGTGTGAAGGAAAACGGGGGTGGAGGGGAAATTGGTTTTGAGGATAGTTTGAACAAGAGTGTCTCTGCTAATGGTAGTTGTGTCACTGTCAAGGATGGGCTTGATTTGAATGCTAGGCTTAATCTCAATGGGGATTTTAATCTGAATGATTCCTGTAGTTCGCCTCTAGACACTGAGGATGATTTGAAGAGAAGAGATTGTATTGATTTGAATTTGGTTGTGGGTAATGAGGAGGATGTTGGCGTGAATGCTGATTTGAATCTGGATGTGAGTAATGAGGATGATGTTGGTGGGAATGGGGGTTACCTGGGTCGTTCGGCCGGGGAGGCGTTGCAGCGGGAATGTAGTTTTGATTTGAATGTGGAGGTGTGTGAGGAAGTTAGGGAAACTCGGTGTGATGATGACGGAAATGGACATTCTGAGGTGGGTGATGCTTTGTTTAGTAGGATGGGGCTGCTCCAAAAGGAAGAGGTAAATGTTAATAACAGTTCCGTAGAAAATGTTGGTGTTAAGGGTAATTTGAATCATGTCTCTGATGCTGTCAAATTGGAGGTAATTCATGTTTCTGCTGCTCATGCAGCTAGAGATGGTTCTTTGTGTTTGATTGAGGAAAATGGAGGTGATGATGGCAAACAAGATGCGGCAACTATTGATTCTCATCAGATTTCAAATGCAATTCCTGTTAGGGATTCTGATTCTGTGGAGGCTCAGCGGTTTGATTGTCCTTCTGAAGGTGGTGTTGCCATAATTCATGAACACGAAGATGATCCAGGAAGTCCGTGCAAACAAGGAAATAACCGAAGGAAAAGAAGAAAAGTATCAGATAATCCACAAGCCACACCAGAGACAGTTTTAAGGAGGAGTTCTCGTCGGGCATCAGCTAGAAAATGGGTTTCAAGTACTGTACAAGTGGAGGTGACTGATGATCCTTTGTTGTCCTTGGAAACCAGTGCCTTGACAGAAGAAAAGCCTCTAATCCCCAATTCTCAGAAGTATGAGCAATGCAAAGATCCTCTTCCAAAGCTGCAATTGCCCCTCTCTTCTACAAATTTGAATTTAGATGGCGTTCCTGTTCTTGAACTTTTTTCTATTTATGCCTGTTTAAGATCATTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATTTTGTAGCTGCACTGAAGTCTGAAATCCCAAGTATATTACTTGACAGTGTTCATGTTTCTATTTTGCAAACTCTGAGAAAGCATTTGGAATACCTTTCCAATGAGGGTTGCCAATCTGCATCCAATTGCCTGAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCCGAGTACCTTCTGATTCATGGCTCAGGATTTAAAATTGGTTTTGATCTTAAACATCTAATGTTCAGAACTGATTACTACAAACAACCTGTAATTGTGAAGGTTGAGATTCTTCAATACCTATGTGATGATATGATTGAGTCGGAAGCCATAAGGTCAGAGCTTAACAGAAGATCTTTGGTAACTGAGTCTGATATGGGTTTTGATCATAGTATGTATTTTGACACTGGCAAGAAAAGAAGAGCTGTAATGGATGTGTCTGGTGGCTCTTGCTTGACTGAGGAGGAGAATGTGGATGACACAACTGACTGGAACAGTGATGAATGTTGCCTGTGCAAGATGGATGGTAGTTTAATATGCTGTGATGGTTGCCCTGCAGCATTCCACTCAAGATGTGTGGGAATTTCTAGTGACCATCTCCCTGAAGGTGACTGGTATTGCCCCGAGTGTGGAATTGGTAAACGCATGGCTTGGATGAAATCACGAAGATCACTACGAGGAGCAGACTTGTTAGGGATGGATCTGGATGGCCGTCTCTATTTTAACAGCTGTTGTTACCTGTTAGTGTCAAACTCATCTGAAGCAGGGTCACTGTTCAATTACTACCACAGAAATGATTTACATGGAGTAATTGAAGCTCTAAAATCTATGGATACTTTATATGAAGGCATACTAATGGCTATCTATGAGCATTGGGATATCCATGCTAACTTGAGTGTGGGGGATAGTGTCTTTAATCAAAGTTCCCACAAGAACATGCAGATGAAGGGAGAATATTCTACTATGCATGCATCTTTAGCACCTTTTACTTCAGAGACATGTTTGGACAATAATCAGGCTATTGATCAAAGAAAGTTGGACGGAAATCCAACTATTGACGTTTGTATGCATCTTGGCCAAGAGTTTCCAAAATCTGGGAACTGCCTAGACTCAACAATCACCATAGAAAGTCCTTGTGTTGCTTCAGATGGATCAGCTGATACCACACAGATTAGAACAGGCATTGACAATGTTCAGATAAATGATCTCAATGATTCCAATAGATGTGATGAATCCTTGAATCCACCAGGAATACCAGAAAGACGCCATCCTGTTGGTGACTGTTCTTTGACACCTTCCAGCTTAGATGTAGGATGCAAAATAAACTTAAGATCTGTAGGTGCTAGCATTACCCCCTCCACGGACAATAAGGATACTTCAGAAGCACCTCGTGGAATTGACTACATAAACTATTACAGCTTTGCCCGAACGGCTTCATTTGTAGAACAGGAGTTGATGTGTAAGTCACCTGAAAAGATGAAAAAGATTTTTGCAATGTCTGAAGAAGAAATTATTTCAGACCAAGCAAAGGTTATTATGAAGAAATCTACTAACTTTTGTTGGCCAAGTATTCAGAACCTGGATGCAGCTGCTCACAAAGAAAAATGTGGGTGGTGCTTTACTTGCAAAGTTGAAAATGAAGATAGTGATTGCTTGTTTAATTCTGTGGTGAAGCCTGTTTGGGAAGTGCCTAATAATACTTTAGTTGGGCTTCAACCCAGGATGATCCAGAATGGACGTCTTAGAGATATCATATGCCTTATCTTCTCTCTTGAGGTTCGACTACGTGGGCTTTTGTTGGGTCCGTGGTTGAATGTGCATCAAACTAATCTTTGGCATAGGGATCTTTTGAGGACATCTGATTTTCTTCCTGTTAAACGATTATTGCTTCTTTTAGAATCCAATTTGCGGCTTCTTGCATTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTGCAACAATGGGATCTGCTACTCATATTGTGGTCAGTTCATCACGCACATCTTCAAAGCAGGGTATTGGAAGGAAAAGGGCCAGATATTCAGATATTGAAACCAGTTCATCTTCAAACACTGCTAGTGGTTTGGGGATGTACTGGTGGAGAGGTGGCAGGCTTTCCCGAAAATTGTTTAATTCTAAGGCTTTGCCTCACTCCCTGGTTACCAAGGCTGCAAGACAAGGTGGGTGTAGGAAGATACCAGGCATTTTATATCCTGAGAATTCAGATTTTGCTCGGAGAAGCAGATTTGTTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGTGTTGAGCAGCTTGCTTTACAGGTTAGAGAGCTATATTCAAACATAAAATGGCATGATATTGAAAACAACCATTCCCTTTATGTGTTGGACAAGGAATCTAGAAAATCAGTCAGGCTGTTCAAAAAATCAATCGTACGCAGGAAGTGCACTGAAGGTCAATTTGTGAAATACCTTATTGATTTTGGGAAGAGAAGGGCTATTCCAGATGTTGTTATTAAACATGGTTCTTTGTTGGAACAATCCTCTAGTGAGAGAAAAAAATATTGGCTGGAGGAGTCTTATCTTCCATTGCATCTTCTAAAGAATTTTGAGGAAAAAAGAATTGTCCGCAAGTCCACTGATAAGAAACTTGGAAAAATTCTTGAGATTGGTAGAGTAAACAGGAAAATTCCTGAACAAAGGGGATTTTCATATTTGTTTACCAGATTGGAAAGATCTGATTGTCATCAGTGTGGGCACTGCAACAAAGATGTTGCAATGAGGGATGCTGTGAGGTGCCTTCATTGCAAAGGATATTTTCACAAGAGACATGTCAGGAAATCAGGTGGCACAAGAACTACTGGAAGCACATATTCATGTCACAGATGTCAAGCTGGGTTGCATGCAAAGACTAATACTAATAAAAGAAAATTTGACTCAAAACTGCAGAAGATTCAAACAAAGAAACGTAAAAGTGTGCCTTCAGTTTGTAAACCAGTGAACCTCAAGGGCAATAAAAAGGCATTGAGTAAGATACGACAGTTGAGATCCCAAAACAGTAAGAATATCCCATCAAGTGTACCTCTTCGTCGTTCTACTAGGAAGGCCAAATCCTTGTATATGAATAGTCAATTGAATGGAGGACACAAAAAAGGAAAGTCAAGTATAAAGACTGTGGGACGTAAAAAGGGAAAGCAAAGTAAATCCAAGGTGACCCCTCAAAAGTCCCAGGAAACTACTGATCAAGATAAGAAGTTGGCAGTTACTACTGCACGAAAGAAGAGAACAAAAATCTGTAACAGTTATTGGCTTAATGGTCTTCAGTTGTCTAGAAAGCCAAATGATGAACGGGTAATGCTGTTTAAAGAGAAGAAGCGTGTTGTCTACTCTGAAGATTTTTCTGTCTCTCTTGATTATCCCAAATGCTGCCTTTGTCGTGGAAATGAATGCACCTTGAATTATATTGCATGTGAAATTTGTGGAGATTGGTTTCATGGTGATGCTTTCGGGCTCAATGTGGAGAATGCCAGACAACTTATTGGATTTAAGTGCCATGTTTGTCTTGATAGAACTGCTCCAATATGTCCCCATATGAAGATTAATGCATTGTCTTGCACTGAAATCAATGCTGCAATTGAGTGTGCAGAGGAGTTATCTAATCCTGTTTCTCTCCAACCTTTAAGTGAGGCTGAAAATGTTGAATACGGTAGGGTAGTTGGTGAGGAGCCTTCTAGTGTAACAGTATTTAATCTGCAAGTGAGAAGTGACAAGCTGTTATATTGTCCCGTGAGTGTTCCAATTCTATTAGTGGTTGTACATCTGTCAAAATTTTTATCTGTCAAGCTATATTGTCCCTTGTGA 5433 0.4116 MEFVGKTVRKEVKDDEFISGTVKSYDPSSGFFEIVYEDGDSEELESSDVASLLQSQQPESVKAKSRVGRKPKKRRRVERKQDSGAGSGNVSENLVAEGSDFRGVLDENVSSAGGGDLDLGCGGFDRALDVGNGGNPVENVNVNGCVKENGGGGEIGFEDSLNKSVSANGSCVTVKDGLDLNARLNLNGDFNLNDSCSSPLDTEDDLKRRDCIDLNLVVGNEEDVGVNADLNLDVSNEDDVGGNGGYLGRSAGEALQRECSFDLNVEVCEEVRETRCDDDGNGHSEVGDALFSRMGLLQKEEVNVNNSSVENVGVKGNLNHVSDAVKLEVIHVSAAHAARDGSLCLIEENGGDDGKQDAATIDSHQISNAIPVRDSDSVEAQRFDCPSEGGVAIIHEHEDDPGSPCKQGNNRRKRRKVSDNPQATPETVLRRSSRRASARKWVSSTVQVEVTDDPLLSLETSALTEEKPLIPNSQKYEQCKDPLPKLQLPLSSTNLNLDGVPVLELFSIYACLRSFSTLLFLSPFELEDFVAALKSEIPSILLDSVHVSILQTLRKHLEYLSNEGCQSASNCLRNLNWDFLDLVTWPIFMAEYLLIHGSGFKIGFDLKHLMFRTDYYKQPVIVKVEILQYLCDDMIESEAIRSELNRRSLVTESDMGFDHSMYFDTGKKRRAVMDVSGGSCLTEEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGISSDHLPEGDWYCPECGIGKRMAWMKSRRSLRGADLLGMDLDGRLYFNSCCYLLVSNSSEAGSLFNYYHRNDLHGVIEALKSMDTLYEGILMAIYEHWDIHANLSVGDSVFNQSSHKNMQMKGEYSTMHASLAPFTSETCLDNNQAIDQRKLDGNPTIDVCMHLGQEFPKSGNCLDSTITIESPCVASDGSADTTQIRTGIDNVQINDLNDSNRCDESLNPPGIPERRHPVGDCSLTPSSLDVGCKINLRSVGASITPSTDNKDTSEAPRGIDYINYYSFARTASFVEQELMCKSPEKMKKIFAMSEEEIISDQAKVIMKKSTNFCWPSIQNLDAAAHKEKCGWCFTCKVENEDSDCLFNSVVKPVWEVPNNTLVGLQPRMIQNGRLRDIICLIFSLEVRLRGLLLGPWLNVHQTNLWHRDLLRTSDFLPVKRLLLLLESNLRLLAFSADWLKHVDSVATMGSATHIVVSSSRTSSKQGIGRKRARYSDIETSSSSNTASGLGMYWWRGGRLSRKLFNSKALPHSLVTKAARQGGCRKIPGILYPENSDFARRSRFVAWRAAVEMSTSVEQLALQVRELYSNIKWHDIENNHSLYVLDKESRKSVRLFKKSIVRRKCTEGQFVKYLIDFGKRRAIPDVVIKHGSLLEQSSSERKKYWLEESYLPLHLLKNFEEKRIVRKSTDKKLGKILEIGRVNRKIPEQRGFSYLFTRLERSDCHQCGHCNKDVAMRDAVRCLHCKGYFHKRHVRKSGGTRTTGSTYSCHRCQAGLHAKTNTNKRKFDSKLQKIQTKKRKSVPSVCKPVNLKGNKKALSKIRQLRSQNSKNIPSSVPLRRSTRKAKSLYMNSQLNGGHKKGKSSIKTVGRKKGKQSKSKVTPQKSQETTDQDKKLAVTTARKKRTKICNSYWLNGLQLSRKPNDERVMLFKEKKRVVYSEDFSVSLDYPKCCLCRGNECTLNYIACEICGDWFHGDAFGLNVENARQLIGFKCHVCLDRTAPICPHMKINALSCTEINAAIECAEELSNPVSLQPLSEAENVEYGRVVGEEPSSVTVFNLQVRSDKLLYCPVSVPILLVVVHLSKFLSVKLYCPL 1810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0251 1810 ProSiteProfiles DDT domain profile. 499 559 IPR018501 -
Aed5g0251 1810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 683 758 IPR013083 -
Aed5g0251 1810 MobiDBLite consensus disorder prediction 1578 1593 - -
Aed5g0251 1810 MobiDBLite consensus disorder prediction 1509 1528 - -
Aed5g0251 1810 Gene3D - 4 52 - -
Aed5g0251 1810 SUPERFAMILY FYVE/PHD zinc finger 1660 1714 IPR011011 -
Aed5g0251 1810 MobiDBLite consensus disorder prediction 45 92 - -
Aed5g0251 1810 CDD PHD1_AIRE 697 739 - -
Aed5g0251 1810 MobiDBLite consensus disorder prediction 352 379 - -
Aed5g0251 1810 PANTHER PHD FINGER FAMILY PROTEIN 1 1731 - -
Aed5g0251 1810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1660 1718 IPR013083 -
Aed5g0251 1810 SMART PHD_3 1665 1712 IPR001965 -
Aed5g0251 1810 SMART PHD_3 1441 1488 IPR001965 -
Aed5g0251 1810 SMART PHD_3 697 740 IPR001965 -
Aed5g0251 1810 MobiDBLite consensus disorder prediction 360 374 - -
Aed5g0251 1810 Pfam PHD-finger 698 739 IPR019787 -
Aed5g0251 1810 MobiDBLite consensus disorder prediction 1564 1611 - -
Aed5g0251 1810 SMART testlast3 499 559 IPR018501 -
Aed5g0251 1810 SUPERFAMILY FYVE/PHD zinc finger 685 739 IPR011011 -
Aed5g0251 1810 ProSiteProfiles Zinc finger PHD-type profile. 695 742 IPR019787 -
Aed5g0251 1810 MobiDBLite consensus disorder prediction 47 62 - -
Aed5g0251 1810 MobiDBLite consensus disorder prediction 394 434 - -
Aed5g0251 1810 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 623 645 IPR028942 -
Aed5g0251 1810 ProSitePatterns Zinc finger PHD-type signature. 698 739 IPR019786 -
Aed5g0251 1810 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 1 1731 - -
Aed5g0251 1810 Pfam DDT domain 503 555 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0251 Aed-Chr5 1690197 1701446 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0251 1 1723 PHD Transcription Factor Family AT5G12400 40.465 0.0 1088
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Aed5g0251 DDT 4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0251 - - gmx:100800973 2976.42