Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0244 ATGCTTCAAAGCTTGGTCCCGCGATCACCTCGCAATTCCAACCCTAACGCTGCTATGAAAACTAAACGCGCCGTTGAAGCCGGAGCCGATTCCCCCCCCGCCGCCGCCGCCGACGAACCTTCCTTCAAGCGAACCAACTTCTCCGCCGCCGACAATACTACTACGGCGGAAGCTGAGGAGGAGCAAGCCTTCGATCCCGAACCTCACGGCGGCGAGTCCACCGGTCTTAAACTCCTCGGTCTTCTCCTCCAATGCGCAGAGTGCGTCGCCATGGACAACCTCGACTTCGCCAACGACCTCCTCCCGGAGATTGCGGAACTCTCGTCGCCGTTCGGGACCTCGCCGGAGCGCGTGGGCGCGTACTTCGCGCAGGCGCTGCAGGCACGCGTGGTGAGCTCCTGTCTGGGCTCCTACTCGCCGCTGACCGCGAAATCGGTAACCCTAACTCAATCGCAGCGAATCTTCAACGCTTTCCAATCGTACAACTCGGTATCGCCGCTGGTGAAGTTCTCGCACTTCACAGCGAACCAGGCGATCTTCCAGGCCTTGGAGGGCGAGGATCGCGTCCACATCATCGACCTGGACATCATGCAAGGCCTCCAATGGCCAGGATTGTTCAACATCCTCGCCTCTCGCTCCAGAAAGATCCGCTCCATGAGAATCACCGGTTTCGGATCCTCCTCGGAGCTACTCGAGTCCACCGGCCGGAGACTTGCCGATTTCGCGAGCTCGCTCGGACTTCCCTTCGAGTTCTTCCCCGTGGAAGGCAAAATAGGAAGCGTAACGGAACTGAGTCAACTCGGCGTTCGTCCCAACGAGGCAATCGTGGTGCACTGGATGCACCACTGTTTGTATGACATAACCGGGAGCGATTTAGGAACGCTGAGGCTTCTGACTCAGCTTCGGCCCAAACTGATAACGACCGTTGAGCAGGATCTCAGCCACGCAGGGAGCTTCCTGGCGCGGTTCGTGGAAGCCTTGCATTATTACAGCGCGTTGTTCGACGCGCTCGGGGACGGGTTAGGTGCGGATAGCCTGGAGAGGCACACGGTGGAGCAGCAGCTATTGGGCTGCGAGATCAGGAACATCGTGGCCGTGGGCGGGCCCAAGAGGACGGGAGAGGTTAAGGTCGAGAGGTGGGGGGATGAATTGAAACGGGGCGGGTTTCGACCCGTTTCATTACGGGGAAACCCGGCTGCACAAGCAAGTTTGTTGCTGGGAATGTTCCCTTGGAGAGGGTACACGCTGGTTGAAGAGAACGGTTCACTCAAGCTTGGTTGGAAGGATTTATCTCTGTTGATTGCCTCCGCTTGGCAACCGTCTGATTTGATTACTTATCCTGATTGA 1347 0.5813 MLQSLVPRSPRNSNPNAAMKTKRAVEAGADSPPAAAADEPSFKRTNFSAADNTTTAEAEEEQAFDPEPHGGESTGLKLLGLLLQCAECVAMDNLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFNILASRSRKIRSMRITGFGSSSELLESTGRRLADFASSLGLPFEFFPVEGKIGSVTELSQLGVRPNEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWGDELKRGGFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDLITYPD 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0244 448 MobiDBLite consensus disorder prediction 1 19 - -
Aed5g0244 448 Pfam GRAS domain family 80 439 IPR005202 -
Aed5g0244 448 MobiDBLite consensus disorder prediction 45 59 - -
Aed5g0244 448 ProSiteProfiles GRAS family profile. 69 439 IPR005202 -
Aed5g0244 448 PANTHER SCARECROW-LIKE PROTEIN 23 48 440 - -
Aed5g0244 448 MobiDBLite consensus disorder prediction 1 71 - -
Aed5g0244 448 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 48 440 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0244 Aed-Chr5 1639502 1640848 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0244 73 442 GRAS Transcription Factor Family AT5G41920 70.933 0.0 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aed5g0244 GRAS 1.5e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0244 - - gmx:100816249 798.119