Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0243 ATGGAAGACATGAACATGAGTGGTGAAATTGCCCTTCCAGGTTTCCGGTTCCACCCGACTGAAGAAGAACTCCTTGACTTCTATCTTAAAAACATGGTCGTTGGCAAGAAACTTCGTTACGATGTCATTGGTTTCCTCAACATCTATCAGCATGATCCATGGGACCTGCCTGGTTTGGCAAAGGTAGGGGAAAGAGAATGGTACTTCTTCGTGCCAAGGGACAAAAAGCATGGAAGCGGTGGAAGGCCAAACCGAACCACTGAAAAAGGGTTCTGGAAAGCCACCGGTTCAGACCGGAAAATAGTGACCTTATCTGATCCGAAGCGCATAATTGGGTTAAGGAAGACCCTGGTTTTCTACGAGGGAAGAGCTCCAAGGGGACAAAAGACCGATTGGGTCATGAATGAGTACCGTTTACCTGACAATTGCAAATTACCTAAGATGGTGTTATGCAAGATATATCGAAAGGCAACTTCGTTGAAAGTGCTGGAGCAAAGGGCAGCACTAGAAGAAGAGAGAGAGATGAAGCAAATGTCTCCTCCTTCATCCACAGACACCATGTCCTTCAGCAGTGCACAGGAAGACCCCTTGTTGCAACATGTTCTTAAAAAGGAGTCTGAAACTGAACAAGACATGTTTGTTTCTGTGCCTAAACAAGAAAAAACAACCAACCAATTGACCTTAATAAAAGATACCAAAACCAACTGTTGTGGCACATCATCACTACAATTGCCCTTTGGGAAGGAGAAACTACCAGACCTTCAGCTTCCCATGCTCTCGGATTGGACCCAAGATACCTTTTGGGCTCAGTTGAATAGCCCATGGCTCCAAAACTTTACTCCCACCAATATTCTCAACTTCTACTGA 867 0.4498 MEDMNMSGEIALPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYQHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYEGRAPRGQKTDWVMNEYRLPDNCKLPKMVLCKIYRKATSLKVLEQRAALEEEREMKQMSPPSSTDTMSFSSAQEDPLLQHVLKKESETEQDMFVSVPKQEKTTNQLTLIKDTKTNCCGTSSLQLPFGKEKLPDLQLPMLSDWTQDTFWAQLNSPWLQNFTPTNILNFY 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0243 288 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Aed5g0243 288 ProSiteProfiles NAC domain profile. 11 156 IPR003441 GO:0003677|GO:0006355
Aed5g0243 288 MobiDBLite consensus disorder prediction 171 190 - -
Aed5g0243 288 Gene3D NAC domain 20 160 IPR036093 GO:0003677|GO:0006355
Aed5g0243 288 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 7 287 - -
Aed5g0243 288 PANTHER NAC TRANSCRIPTION FACTOR 29-LIKE 7 287 - -
Aed5g0243 288 SUPERFAMILY NAC domain 10 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0243 Aed-Chr5 1631640 1633881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0243 6 288 NAC Transcription Factor Family AT2G17040 60.208 1.47e-114 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aed5g0243 NAM 2.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0243 - - gmx:100816770 517.694