Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0242 ATGGCTTTCTTTATTTCCTTCCTCATCTTCCTTCTCGCCGCTTCATCTGCCACTGCATGTGATCGCTGCCTGCACCAATCCAAGGCTTCCTATTTCTCCAAAGCCTCTGCACTTTCAGATGGGGCATGTGGGTATGGCTCTTTGGCACTAGACATAAGTGGTGGACAGCTTGCAGCTGGTGTGGCTTCTCTCTTCAAAAATGGAGCAGGATGTGGTTCCTGCTTTCAGATAAGATGCAGGAACCCAAGTGTTTGCAGCAAAGAAGGTACCAGAGTTGTATTGACTGATCTTAATCACAACAACGAAACTGATTTTGTGGTCAGCATCAGAGCCTTTGCGGGCATGGCTCAGAAGGGTATGGGGCAGCAAATATTGAAGCTTGGCATTGTTGACATTGAATACAAGAGAGTACCCTGTGATTACAAAAAACAGAATTTGGCTGTTCGTGTAGAAGAAGAGTCAAGCAAGAAGGCTGATTACTTGGCGATTAAATTTTTGTATGAAGGGGGACAAACAGAGATAGTAGCCGTTGATGTGGCTCAAGTTGGGTCTTCAAATTGGAGGTTCATGACCAGAAACCACGGGGCAGTGTGGGACACTAGCAGGGTACCCCAAGGTCCATTGCAATTTCGGATAGTGGTTACCGCTGGGTATGATGGCAAGTGGATTTGGGCAAAGAACCTTCTACCTGCTAATTGGATAAACGGTGTCGTATATGACTCTGGACTTCAGATTACAGATATTGCACAAGAGCCCTGTTCCCCCTGCGATCATTCTTGA 780 0.4641 MAFFISFLIFLLAASSATACDRCLHQSKASYFSKASALSDGACGYGSLALDISGGQLAAGVASLFKNGAGCGSCFQIRCRNPSVCSKEGTRVVLTDLNHNNETDFVVSIRAFAGMAQKGMGQQILKLGIVDIEYKRVPCDYKKQNLAVRVEEESSKKADYLAIKFLYEGGQTEIVAVDVAQVGSSNWRFMTRNHGAVWDTSRVPQGPLQFRIVVTAGYDGKWIWAKNLLPANWINGVVYDSGLQITDIAQEPCSPCDHS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0242 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 241 IPR007117 -
Aed5g0242 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Aed5g0242 259 PANTHER EXPANSIN-B3 7 257 - -
Aed5g0242 259 Pfam Lytic transglycolase 58 134 IPR009009 -
Aed5g0242 259 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Aed5g0242 259 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Aed5g0242 259 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Aed5g0242 259 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Aed5g0242 259 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Aed5g0242 259 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Aed5g0242 259 Gene3D - 141 246 IPR036749 -
Aed5g0242 259 SUPERFAMILY PHL pollen allergen 145 241 IPR036749 -
Aed5g0242 259 SUPERFAMILY Barwin-like endoglucanases 10 142 IPR036908 -
Aed5g0242 259 Gene3D - 12 140 IPR036908 -
Aed5g0242 259 PANTHER EXPANSIN-LIKE A1-RELATED 7 257 - -
Aed5g0242 259 PRINTS Major pollen allergen Lol pI signature 59 70 IPR005795 GO:0005576|GO:0019953
Aed5g0242 259 PRINTS Major pollen allergen Lol pI signature 217 234 IPR005795 GO:0005576|GO:0019953
Aed5g0242 259 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576|GO:0019953
Aed5g0242 259 PRINTS Major pollen allergen Lol pI signature 166 181 IPR005795 GO:0005576|GO:0019953
Aed5g0242 259 PRINTS Major pollen allergen Lol pI signature 79 89 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0242 Aed-Chr5 1619992 1621218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0242 2 258 Expansin Gene Family AT3G45960 58.687 3.52e-103 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0242 - - gmx:100305884 452.981