Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0239 ATGGAAGCTATATTCATCACCAAACCAGCTTCCCATTCTCATCTCTTAACTAAACTCTCTCCAAACCCCAAACACCTCTTCCCTCTCCACCAACAATCCTTTCTCAACTTCCACCAAATCCCCACGCGCTTCCTTTCCGTCACCGCCGTTTTCCAAAACCAACAACAGGAAGCAGCAGCAGCTCCCGAAGATGAGTCCTACGGCGAAGTCAAAGGCATCATCGGAAGCAGAGCCCTGGACGGTGCCACCGGCATGGAGTACCTCATCGAGTGGAACGACGGCCACGCGCCGTCCTGGGTCCCCGCCGACTTCATAGCCAAAGACGTCGTCGCCGAGTACGAAACTCCCTGGTGGACCGCCGCCAAGAAAGCCGACGAGTCCGCGTTCAAGAAACTAATCGACTCCGACGATGCTCGCGACGTCGACGCCGTGGACGCCGACGGCCGCACAGCGCTCCTCTTCGTCGCCGGACTTGGCTCTGAGCCCTGTGTGAAGCTGCTCGCGGAGGCCGGCGCGAATCTAGACCACCGAGACCGGAACGGCGGTCTTACGGCGCTGCACATGGCAGCGGGGTACGTGAGGCCGGGGGTAGCGAAGGTGCTGTTGGATCTCGGCGCGGATCCCGAGGTGGCGGACGACCGAGAAAGGACGGCGCTGGATCTAGCGAGGGAGATTCTGAAGGTGACGCCGAAGGGGAATCCGATGCAGTTCGGGCGAAGGATTGGGCTTGAAGGCGTAATTAAGGTTTTGGAAGGAGCGGTGTACGAGTTCGCGGAGGTGCAGGAGATTCTGGAACGGAGAGGGAAGGGTGAGAATTTGGAGTACCTTGTGCGGTGGAAGGACGGTGGTGCCAATGAGTGGATTAAGGCCAAGTTTGTTGCGGAGGATTTGGTTAAAGACTACGAGGCTGGCCTTGAGTACGCCGTCGCTGAGGCCGTGCTTGCCAAAAGGATCGCCGATGAAGGGACGCCCGAGTTTTTGGTTAAATGGGCCGATTTGGATGAACCAACCTGGGAGCCCGAGGAGAATGTAGACCCTGAACTGGTCAAAACGTTCCAGGAAACTAACAACCAGGCCCAACCCACTAGTAATGGGCCTTCTGTCGTCGTTTCCACTCAGGATAGCCCTAATCCGTGA 1137 0.577 MEAIFITKPASHSHLLTKLSPNPKHLFPLHQQSFLNFHQIPTRFLSVTAVFQNQQQEAAAAPEDESYGEVKGIIGSRALDGATGMEYLIEWNDGHAPSWVPADFIAKDVVAEYETPWWTAAKKADESAFKKLIDSDDARDVDAVDADGRTALLFVAGLGSEPCVKLLAEAGANLDHRDRNGGLTALHMAAGYVRPGVAKVLLDLGADPEVADDRERTALDLAREILKVTPKGNPMQFGRRIGLEGVIKVLEGAVYEFAEVQEILERRGKGENLEYLVRWKDGGANEWIKAKFVAEDLVKDYEAGLEYAVAEAVLAKRIADEGTPEFLVKWADLDEPTWEPEENVDPELVKTFQETNNQAQPTSNGPSVVVSTQDSPNP 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0239 378 SMART ANK_2a 181 210 IPR002110 GO:0005515
Aed5g0239 378 SMART ANK_2a 147 176 IPR002110 GO:0005515
Aed5g0239 378 SMART ANK_2a 112 143 IPR002110 GO:0005515
Aed5g0239 378 Pfam Chromo (CHRromatin Organisation MOdifier) domain 310 354 IPR023780 -
Aed5g0239 378 Gene3D - 65 111 - -
Aed5g0239 378 Gene3D - 254 303 - -
Aed5g0239 378 SUPERFAMILY Ankyrin repeat 112 224 IPR036770 -
Aed5g0239 378 SUPERFAMILY Chromo domain-like 256 303 IPR016197 -
Aed5g0239 378 Gene3D - 112 253 IPR036770 -
Aed5g0239 378 ProSiteProfiles Ankyrin repeat profile. 147 179 IPR002110 GO:0005515
Aed5g0239 378 ProSiteProfiles Ankyrin repeat region circular profile. 147 179 - -
Aed5g0239 378 ProSiteProfiles Chromo and chromo shadow domain profile. 308 364 IPR000953 -
Aed5g0239 378 PANTHER HOMEOBOX PROTEIN WARIAI 1 359 - -
Aed5g0239 378 SUPERFAMILY Chromo domain-like 63 117 IPR016197 -
Aed5g0239 378 SUPERFAMILY Chromo domain-like 306 359 IPR016197 -
Aed5g0239 378 Pfam Ankyrin repeats (many copies) 167 222 IPR002110 GO:0005515
Aed5g0239 378 MobiDBLite consensus disorder prediction 337 378 - -
Aed5g0239 378 Gene3D - 304 356 - -
Aed5g0239 378 MobiDBLite consensus disorder prediction 349 378 - -
Aed5g0239 378 ProSiteProfiles Ankyrin repeat profile. 181 213 IPR002110 GO:0005515
Aed5g0239 378 CDD CD3_cpSRP43_like 305 352 - -
Aed5g0239 378 ProSiteProfiles Ankyrin repeat region circular profile. 181 213 - -
Aed5g0239 378 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 1 359 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Aed5g0239 378 SMART chromo_7 307 357 IPR000953 -
Aed5g0239 378 SMART chromo_7 256 306 IPR000953 -
Aed5g0239 378 SMART chromo_7 66 118 IPR000953 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0239 135 222 CAMTA Transcription Factor Family AT5G09410 37.234 1.31e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0239 K12271 - gmx:100818382 652.129