Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0236 ATGTCAGCTTTAACAATGATAAATAAGAACCCCCGGGCACATTCGTTTTCTCAAGCAGTTGGTATGGATCACCAATTTTCGAACGTTCATAGTCGTGAGCCAATCCCTAGGGCCTTAGTTCACAAGAACTCTTCAGAGCCCAAATTTCTTGCCTCCATTGGTGCCCACGAATTTTTCACAATAGAGACGTGGAAAGCAGCTTTGGTAGAGTTAATTGGAACTGCTGCACTAATGTTCACCCTAACGAGTTGCAATATTGCATGTTTAGAGTCACACGAGGGCAATCCCAAGCTTCTTATTCCCTTTGCAGTTTTCATCATAGTCTTCTTGTTTCTAATTGTGATGGTTCCTCTATCCGGTGGTCATATGAACCCTATTTTCACATTCATCGCGGCTTTAAAGGGTGTTGTGACCCTTTCTCGTGCTCTACTTTACGTCTTAGCACAATGCATTGGCTCAATAATTGGTTTCTTTATGCTCAAGAGTGTGATGGAGCCAAAATTAGCAGACACATATTCTTTGGGAGGCTGTGCCCTTGGCGACAACAAAGGACAAAGTTCAGGTATAAAGCCACAAGATGCTTTGTTGTTGGAATTCTCTTGCACGTTCTTAGTACTCTTTGTGGGTATAACGTTGGCATTTGACAAGAAAAGATGCAAGGAATTAGGGTTGCCAATGGTGTGTTTGGTGGTGGCAGCATCTTTGGCACTGGCAGTGTTTGTGTCAATAACTGCAACTGGGAAGCCTGGCTATGCAGGTGCTGGGCTAAGCCCGGCAAGATGCTTAGGCCCAGCGTTGCTTCATGGAGGCTCACTATGGAGTGGGCATTGGGTTTTCTGGCTTGGGCCTTTCTTGGCCTGTATTATCTATTATAGTGTCTCCATTAACCTACCAAAGAAGGGTTTGGATTGGGTAGATGGAGAATATGATGTCTTCAAATTGGCTTGTGGGACTAACGATGCCGTTTTAAATGACTGA 978 0.4427 MSALTMINKNPRAHSFSQAVGMDHQFSNVHSREPIPRALVHKNSSEPKFLASIGAHEFFTIETWKAALVELIGTAALMFTLTSCNIACLESHEGNPKLLIPFAVFIIVFLFLIVMVPLSGGHMNPIFTFIAALKGVVTLSRALLYVLAQCIGSIIGFFMLKSVMEPKLADTYSLGGCALGDNKGQSSGIKPQDALLLEFSCTFLVLFVGITLAFDKKRCKELGLPMVCLVVAASLALAVFVSITATGKPGYAGAGLSPARCLGPALLHGGSLWSGHWVFWLGPFLACIIYYSVSINLPKKGLDWVDGEYDVFKLACGTNDAVLND 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0236 325 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 39 319 - -
Aed5g0236 325 PRINTS Major intrinsic protein family signature 197 215 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0236 325 PRINTS Major intrinsic protein family signature 277 297 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0236 325 PRINTS Major intrinsic protein family signature 65 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0236 325 PRINTS Major intrinsic protein family signature 104 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0236 325 PRINTS Major intrinsic protein family signature 238 260 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0236 325 PRINTS Major intrinsic protein family signature 141 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0236 325 SUPERFAMILY Aquaporin-like 61 289 IPR023271 -
Aed5g0236 325 Gene3D Glycerol uptake facilitator protein. 52 299 IPR023271 -
Aed5g0236 325 PANTHER AQUAPORIN-LIKE 39 319 - -
Aed5g0236 325 Pfam Major intrinsic protein 60 288 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0236 Aed-Chr5 1581296 1582341 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0236 17 289 Major Intrinsic Protein MIP AT3G54820 28.070 2.23e-21 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0236 K09866 - gmx:100797262 508.064