Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0234 ATGAGTGTGCGATTCATTTCCTTGGTAATTACAGAGGATTCTAGTGAAGACCTATCTTCACAATCAGAAACCAGCAACAACAACAACAATATCACGAATGCTTTTTCATTGGACGATGATTTGCTTTTTAAACAGAGTTTTGATATTATGAATCTAACCATCCTTTGTCTTAAAATCTCTGGACACATGGATTCAGCTAAATCCCATGTTGTTGTTAAACAACCTCCGTGTTCTGTTCAGACTAGCAATCCAATCTGTTTGATGGGAAAGAACTCTTTGAGGCGAAAGTGTTTTGCTTCTATTGGGGCACATGAGATTTTCAGACCAGAGAATTACAAAAGGTTTGTCTCATGCCCCGGGATGTGGAAAGCAGCAGTAACAGAATTAACAGCCACTGCCTCTCTAATGTTCACCTTGACAACATCCATAATTGCATGCTTGGACTCACAAGAGGTTGATCCAAAGCTTCTTGTTCCCTTTGCTGTGTTCATGATAGCGTTTTTGTTCCTAGTTGTGACAGTTCCTCTGACGGGGGGACACATGAGTCCTGTTTTCACATTCATTGCAGCTTTAAAGGGTGTTGTGACTCTCACCCGTGCTCTCATCTACGTGTTAGCACAATGCATTGGCTCAGTACTTGGTTTCTTTATACTAAAGTGTGTCATGGACACCAAATTAGCTTACACATATTCCTTGGGAGGTTGTGCCATCAGTGGCAAAGATGTAAATTCCGGTGTTAAGCCACTGGATGCTTTGATAGTGGAAATCACTTGCACGTTTCTGGTACTCTTTGTTGGTGTCACTTTGGCATTTGACAAGAAAAGGTCTAGGGATTTGGGCCTCCCTATGGTGTGCTTGGTGGTGGCTGGAGCCATGGCTTTGGCAGTTTTTGTGTCCATAACTGTAACTGGCCGGGCCGGTTATGCAGGTGTGGGCCTCAACCCAGCAAGATGCTTAGGCCCAGCGTTGCTTCATGGAGGCTCACTTTGGAATGGCCATTGGGTTTTCTGGCTTGGGCCTTTCTTGGCATGTGTACTCTATTATGCTGTGTCTATCAACCTTCCAAAGGAGGGTTTGGTTTGGGTAGATGATGATCAAAGGAAAGCAGCAGCTTCATGA 1119 0.4397 MSVRFISLVITEDSSEDLSSQSETSNNNNNITNAFSLDDDLLFKQSFDIMNLTILCLKISGHMDSAKSHVVVKQPPCSVQTSNPICLMGKNSLRRKCFASIGAHEIFRPENYKRFVSCPGMWKAAVTELTATASLMFTLTTSIIACLDSQEVDPKLLVPFAVFMIAFLFLVVTVPLTGGHMSPVFTFIAALKGVVTLTRALIYVLAQCIGSVLGFFILKCVMDTKLAYTYSLGGCAISGKDVNSGVKPLDALIVEITCTFLVLFVGVTLAFDKKRSRDLGLPMVCLVVAGAMALAVFVSITVTGRAGYAGVGLNPARCLGPALLHGGSLWNGHWVFWLGPFLACVLYYAVSINLPKEGLVWVDDDQRKAAAS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0234 372 Pfam Major intrinsic protein 120 343 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0234 372 PANTHER AQUAPORIN-LIKE 82 366 - -
Aed5g0234 372 PRINTS Major intrinsic protein family signature 334 354 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0234 372 PRINTS Major intrinsic protein family signature 123 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0234 372 PRINTS Major intrinsic protein family signature 162 186 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0234 372 PRINTS Major intrinsic protein family signature 295 317 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0234 372 PRINTS Major intrinsic protein family signature 199 218 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0234 372 PRINTS Major intrinsic protein family signature 254 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Aed5g0234 372 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 82 366 - -
Aed5g0234 372 Gene3D Glycerol uptake facilitator protein. 107 356 IPR023271 -
Aed5g0234 372 SUPERFAMILY Aquaporin-like 119 348 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0234 Aed-Chr5 1578994 1580900 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0234 176 346 Major Intrinsic Protein MIP AT1G17810 33.918 1.50e-23 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0234 K09866 - gmx:100804160 532.332