Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0213 ATGGGGAGAAGAGCATGCAGTGATGAAATTAGTAGTGGTTTCAAGAAAGGGCCTTGGACCCCAGAAGAGGATAGAATATTGGTGGATTACATTCAGAAACATGGGCATGGGAGTTGGAGAGCACTTCCAAAACTTGCAGGATTGAACAGGTGTGGAAAGAGTTGCAGGCTAAGGTGGACTAACTATTTGAGGCCTGATATCAAAAGAGGAAAATTTTCTGAGGAAGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGGGAATAAGTAA 273 0.4212 MGRRACSDEISSGFKKGPWTPEEDRILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSEEEEQLIINLHAVLGNK 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0213 90 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Aed5g0213 90 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 90 - -
Aed5g0213 90 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 90 IPR017930 -
Aed5g0213 90 SUPERFAMILY Homeodomain-like 17 90 IPR009057 -
Aed5g0213 90 CDD SANT 18 63 IPR001005 -
Aed5g0213 90 Gene3D - 15 68 - -
Aed5g0213 90 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 67 IPR017930 -
Aed5g0213 90 PANTHER OS06G0112700 PROTEIN 1 90 - -
Aed5g0213 90 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Aed5g0213 90 SMART sant 15 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0213 Aed-Chr5 1485870 1486142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0213 1 90 MYB Transcription Factor Family AT1G34670 80.000 3.00e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed5g0213 Myb_DNA-binding 9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0213 K09422 - gmx:547488 176.022