Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0200 ATGGGAGACGAAGAGGAGGAGGAGGTGATGGGTTCGGGGCAATCAGCCTCCACCAATAGCTTGCCTCCTCCCGGCGCCGGCGCCGGCGATAACAGCACACTCCTCAAATTGAACCATCTCGACATACATGCCGATGATGCTGGATCACACGCTTCTGCTGCTGGCAAGAAGAAAAAGAGAGGCGGCCAACGGGCTGTTGGACCCGATAAGACTGGTCGAGGTCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAACAGGGGAAGAACAACATACAATGAGGTGGCGGATGAGCTTGTTGCTGAGTTTTCTGATCCAAGCAATAGGGAATTGCCCCCTGATCAGCAACAATATGATGAGAAAAACATCCGTCGTAGGGTCTATGATGCTCTCAACGTTCTCATGGCAATGGATATTATTTCTAAGGACAAAAAGGAAATTCAATGGAAGGGCCTTCCTCGTACTACTGTGAATGACATTGAAGAACTAAAGACAGAGCGTCTTGGGCTCAGGAGTAGAATTGAAAAGAAAACAGCCTATCTGCAGGAGCTTGAGGAGCAATTTGTAGGTCTTCAGAACCTTATTCAACGAAATGAGCAGTTATATAGCTCAGGGAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTCTAGTACAGACACGTCCTCATGCAACTGTGGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGCTCTCCTTTTGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGGATGATAATGTGACACAAAATCTTACTGATGGAGGTGAAGGTTCTAGCATGTCAGGCTTGTGTCAGCCACAGGCTCCTCCTACAAGTTTAAATGTGTCGAATAGGCCTCCAACATCACCTCCTCTCCCTGGCATACTAAAGGCAAGGGTTAAGCAAGAGCATTAA 969 0.4603 MGDEEEEEVMGSGQSASTNSLPPPGAGAGDNSTLLKLNHLDIHADDAGSHASAAGKKKKRGGQRAVGPDKTGRGLRQFSMKVCEKVENRGRTTYNEVADELVAEFSDPSNRELPPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTTVNDIEELKTERLGLRSRIEKKTAYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSSPFELHDDNYVLKAMKFCERPQDDNVTQNLTDGGEGSSMSGLCQPQAPPTSLNVSNRPPTSPPLPGILKARVKQEH 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0200 322 CDD DP_DD 158 261 IPR014889 -
Aed5g0200 322 Pfam E2F/DP family winged-helix DNA-binding domain 73 153 IPR003316 GO:0005667|GO:0006355
Aed5g0200 322 SUPERFAMILY E2F-DP heterodimerization region 160 274 IPR037241 -
Aed5g0200 322 SUPERFAMILY "Winged helix" DNA-binding domain 73 154 IPR036390 -
Aed5g0200 322 PANTHER TRANSCRIPTION FACTOR DP 23 322 - -
Aed5g0200 322 Coils Coil 169 203 - -
Aed5g0200 322 SMART E2F_TDP_2 70 153 IPR003316 GO:0005667|GO:0006355
Aed5g0200 322 Gene3D Transcription factor DP 159 279 IPR038168 -
Aed5g0200 322 SMART DP_2 160 320 IPR014889 -
Aed5g0200 322 Gene3D - 66 158 IPR036388 -
Aed5g0200 322 PIRSF Txn_factor_DP 4 322 IPR015648 GO:0005667|GO:0051726
Aed5g0200 322 MobiDBLite consensus disorder prediction 1 73 - -
Aed5g0200 322 MobiDBLite consensus disorder prediction 270 322 - -
Aed5g0200 322 MobiDBLite consensus disorder prediction 39 53 - -
Aed5g0200 322 PANTHER TRANSCRIPTION FACTOR DP 23 322 IPR015648 GO:0005667|GO:0051726
Aed5g0200 322 MobiDBLite consensus disorder prediction 270 300 - -
Aed5g0200 322 MobiDBLite consensus disorder prediction 11 26 - -
Aed5g0200 322 Pfam Transcription factor DP 161 274 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0200 Aed-Chr5 1434162 1437080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0200 59 271 E2F-DP Transcription Factor Family AT5G02470 52.804 2.25e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aed5g0200 DP 1.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0200 K04683 - gmx:100798342 567.385