Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0178 ATGGAGATAGAGCAAGCCACTGCCAATGAAGAAAAGGGTGGTGATAGTATTGTTTCATCAGATAATAAGAGAGGGATGTATCTTGTGTGGGAAGATTTGACTGTTGTAGTTCCAAATTTTGGGAATGGACACACTAGAAGATTGCTTGATGGGTTGAATGGATATGCTGAACCTAACAGAATCATGGCTATCATGGGTCCTTCTGGCTCTGGAAAATCTACTCTTCTTGATGCTTTAGCAGGTAGACTCTCTAGAAACGTTATCATGTCTGGCAATGTTCTTTTAAATGGAAAAAAGAAGAGATTGGACTATGGAGTTGTGGCTTATGTCACCCAAGAAGACATAATGCTGGGAACACTAACAGTGAGAGAGACAATATCATACTCAGCAAATCTAAGGCTTCCATCAAGCATGAGCAAAGAAGAGGTGAATGATATAATAGAGGGAACAATAATGGAGATGGGTCTTCAAGAATGTGGTGATAGGCTTATAGGGAATTGGCACTTGAGAGGTATAAGTGGTGGAGAAAAGAAAAGGCTAAGCATAGCACTTGAAATCCTAACAAGGCCAAGCCTTTTGTTCCTTGATGAACCCACCAGCGGTCTTGATAGTGCCTCAGCTTATTTTGTTGCCCAAACTTTGAGAAACTTAGCTCATGATGCCAAGACTGTTATCTCTTCTATTCATCAACCAAGCAGTGAGGTCTTTGCACTCTTTGACGACCTCTTTCTTCTTTCTGGCGGTCAAACTATTTATTTTGGACCTGCACAAAAGGCACTTGAGTTCTTTGCGAAAACGGGATTCCCATGTCCAAGTAGAAGAAACCCTTCAGATCATTTCCTCCGTTGTATTAATTCAGACTTTGACGCTGTCCCAACGACCTTGAATATGGCCTGCCAAAGACTACAAGAAGAAATATCAACTGCAGAAATCAAAGCAACACTCATAGAGAAATACCGATGGTCAGAGCACGCAACCACTGCAAGAACAAGACTGAAAGAAATCTCTAAAACTGAAGTATATGAAAATATTGAAAGTGAAAGTAAAAGGAAAAGTGGAGCGAAATGGTGGAAGCAACTATCAACGCTGACTGAAAGATCTTTCGTGAACATGTCTAGAGATGTGGGATACTACTGGATAAGGATAAGTATCTATGTTGCCTTATCTTTGTCTGTTGGAACAATATTTTATGGAGTTGGGTCTAGTTATGGAGCCATTTTTGCAAGAGGAGCATGTGGCGCATTTATTTCAGGTTTCATGACATTCATGTCCATTGGGGGTTTCCCCTCTTTCATTGAAGAAATGAAGGTTTTCTACAAAGAAAGAATGAACGGGTATTATGGAGTTGGAGTCTACATTCTATCAAATTTTCTGTCTTCCTTTCCCTTTGTGGCAGTCATGTCCATTGCTACGGGGACAATAACCTATTATATGGTTAAGTTCCGTTCTGAATTCTCACATTATGTCTATATCTGTCTCGATCTTATTGGTTGCATTGCCGTTGTCGAGAGCTCCATGATGATCATAGCTTCTCTGGTTCCCAACTTCCTCATGGGATTGATAATTGGAGCTGGATATATAGGTGTTATGATGATGACTGCTGGGTATTTCCGTCAAATCCATGATCTTCCAAAGATATTCTGGCGTTACCCAATCTCATACATAAACTATGGAGCATGGGGATTGCAGGGAGCATTCAAGAATGACATGATTGGGATGGAGTTTGATCCATTGGAACCTGGGGGCCCTAAACTGAAAGGAGAAATAATCCTCAAAACCAGGCTTGGCATTCAGGTTGATATTTCAAAATGGTGGGACTTAGCAGCAGTGATGACCATCCTCGTCACGCTTAGAATTCTTTTCTTTTTCATTCTCAAATTCAAGGAGAGAGCAGTACCTTTTCTTTATAGTATCTATGCCACCCTAACTCTGCAACGTATCAAGAAGCGACCTTCCTTCAGGAAAGGACCATCTTTCCCTTCCAAGCGCCACCAATCACTGCATCCCTTGTCTTCTCAAGAGGGTCTCAACTCCCCTATTCATTAG 2046 0.412 MEIEQATANEEKGGDSIVSSDNKRGMYLVWEDLTVVVPNFGNGHTRRLLDGLNGYAEPNRIMAIMGPSGSGKSTLLDALAGRLSRNVIMSGNVLLNGKKKRLDYGVVAYVTQEDIMLGTLTVRETISYSANLRLPSSMSKEEVNDIIEGTIMEMGLQECGDRLIGNWHLRGISGGEKKRLSIALEILTRPSLLFLDEPTSGLDSASAYFVAQTLRNLAHDAKTVISSIHQPSSEVFALFDDLFLLSGGQTIYFGPAQKALEFFAKTGFPCPSRRNPSDHFLRCINSDFDAVPTTLNMACQRLQEEISTAEIKATLIEKYRWSEHATTARTRLKEISKTEVYENIESESKRKSGAKWWKQLSTLTERSFVNMSRDVGYYWIRISIYVALSLSVGTIFYGVGSSYGAIFARGACGAFISGFMTFMSIGGFPSFIEEMKVFYKERMNGYYGVGVYILSNFLSSFPFVAVMSIATGTITYYMVKFRSEFSHYVYICLDLIGCIAVVESSMMIIASLVPNFLMGLIIGAGYIGVMMMTAGYFRQIHDLPKIFWRYPISYINYGAWGLQGAFKNDMIGMEFDPLEPGGPKLKGEIILKTRLGIQVDISKWWDLAAVMTILVTLRILFFFILKFKERAVPFLYSIYATLTLQRIKKRPSFRKGPSFPSKRHQSLHPLSSQEGLNSPIH 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0178 681 ProSitePatterns ABC transporters family signature. 172 186 IPR017871 GO:0005524
Aed5g0178 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 268 IPR027417 -
Aed5g0178 681 SMART AAA_5 58 248 IPR003593 -
Aed5g0178 681 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 28 272 IPR003439 GO:0005524
Aed5g0178 681 CDD ABCG_EPDR 25 254 - -
Aed5g0178 681 MobiDBLite consensus disorder prediction 652 681 - -
Aed5g0178 681 Pfam ABC transporter 49 200 IPR003439 GO:0005524
Aed5g0178 681 Gene3D - 17 267 IPR027417 -
Aed5g0178 681 MobiDBLite consensus disorder prediction 664 681 - -
Aed5g0178 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 22 676 - -
Aed5g0178 681 PANTHER ABC TRANSPORTER G FAMILY MEMBER 13 22 676 - -
Aed5g0178 681 Pfam ABC-2 type transporter 359 567 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0178 Aed-Chr5 1276826 1281676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0178 60 243 Calmodulin-binding Proteins AT2G36910 29.756 6.27e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0178 K05681 - gmx:100788651 1210.67