Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0158 ATGAGAGACATTTGTAGGAACTTTCAGCGAGGCAGCTGTCAATATGGAGAAAGGTGTAGATATTTACATGTTCAGCAACAGCGAAAACCTAATGCTAATGGGTTTGGAGGACAGTCACAGAACAGTTCTCATCAACAGCAAAGTACAAATCCTTTTGGATTTGGGTCTAGCTCTGCCTCACAACAACAACAACAGCAGCAGAAGACTAATCCTTTTGGTTTTGGCAAGCAGAACAACAGCTCCCCTCATTCTGAATACAAACCAAACCAATACAAGCCTTTTGAAAACAAATGGATTCGACAACAATCTTCCAATTCCAAACCCCAGAATGGCGTGAAATCTGATAACAACACCAAACAATCGGAACATATATGCACAGATCCTGAGAACTGTAAGCGCCAGATTGCAGTAGATTTTGAGCAAGAGAAACCGCTTTGGATACTTACATGCTACAGTCATTGCAAAGGTGGTCCTTGTGACATTGTTGGTGATATTAGCTATGAAGAATTGCGGGCATCTGCTTATGAGGATGCTAAGAGTGGGATGAACTTGCAATCGATAGTTGAGAAAGAGAGAAATATACTAAAATCCAAGTTGGTTGAGTTTGAGAAACTTCTTTCTGAACCTTACAAAGTACCAACAAATTCTTCTCTTGGCAATCAAACACCCCAATCTATTGGAGCCAATGCAAATCCGTTTGTAACATCTCAAAGTAATGGTCCTTTGTCAGTCTCAAGCTTTAGCCAACTGGGTACTTCATTGAACATGGGTTTTGAAAGTGGCCAAGTGGTTACATTGGTATCCATTGGAGCTTTGTTTCCTTTGGAATTACGTGGTGATTCAAAGTATGGTGTGCTAGAATGGACAAGATGCAGGCCATCTGCACCACTAACAAACACTCCAGCCCAGCCTAGTTTCTTTGGAAGTGGAGGTAGTGGTGCAAACACTCCAGCACAGTCTAGTTTCTTTGGAAGTGGAGGAAACTCTTTGGCATCCAACACAGCAAACCTAAACAGCAGTGGTGTCTTTGGTGTTCAAAATGCCCCCTATTCTACACCAGTGGATTTGAAAATGTTTCCAGGTTCAACTCAGCAATCGTCGTCTGCCTTCAATAACTCTGGTGCCACTACAATGTTTCAAACAACACCAGATGTCCAGTTGTCAAATAAGTCTCAAGTGGAGAGTACGTCAATAGATGCCAGTGTTTGGTTAAAAGAGAAATGGAATCCGGGAGAGATTCCAGAAGAAGCTCCTCCTGATACATTTGTACGGTAG 1275 0.4212 MRDICRNFQRGSCQYGERCRYLHVQQQRKPNANGFGGQSQNSSHQQQSTNPFGFGSSSASQQQQQQQKTNPFGFGKQNNSSPHSEYKPNQYKPFENKWIRQQSSNSKPQNGVKSDNNTKQSEHICTDPENCKRQIAVDFEQEKPLWILTCYSHCKGGPCDIVGDISYEELRASAYEDAKSGMNLQSIVEKERNILKSKLVEFEKLLSEPYKVPTNSSLGNQTPQSIGANANPFVTSQSNGPLSVSSFSQLGTSLNMGFESGQVVTLVSIGALFPLELRGDSKYGVLEWTRCRPSAPLTNTPAQPSFFGSGGSGANTPAQSSFFGSGGNSLASNTANLNSSGVFGVQNAPYSTPVDLKMFPGSTQQSSSAFNNSGATTMFQTTPDVQLSNKSQVESTSIDASVWLKEKWNPGEIPEEAPPDTFVR 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0158 424 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
Aed5g0158 424 PANTHER MAKORIN-RELATED 2 66 IPR045072 -
Aed5g0158 424 MobiDBLite consensus disorder prediction 30 90 - -
Aed5g0158 424 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 64 422 - -
Aed5g0158 424 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 2 66 - -
Aed5g0158 424 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3 25 IPR000571 GO:0046872
Aed5g0158 424 PANTHER MAKORIN-RELATED 64 422 IPR045072 -
Aed5g0158 424 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
Aed5g0158 424 Gene3D - 1 77 - -
Aed5g0158 424 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Aed5g0158 424 MobiDBLite consensus disorder prediction 103 124 - -
Aed5g0158 424 MobiDBLite consensus disorder prediction 103 119 - -
Aed5g0158 424 MobiDBLite consensus disorder prediction 30 87 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed5g0158 zf-CCCH 6.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0158 K14321 - gmx:100814339 597.045