Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0121 ATGTCTCCACAAACGCCAACTATCTCACTTTTCATTATCCTAGCTTCATTAGTAATCGTCTTATGTAATGGCTATTACATAGAGGGATCATTTTATAAAACAAATGCTAAACACTATCCTGTGCATGATGGGAGGTTGAATATCAAGACAAAACATGAACATTTTGGTCTTATGACAAGAGCTACTCATCTTTCTTCTAGACCTCGTGGAACAGTTAGTGTTGATGCCTTTGGAGCCAAAGCGGATGGAAGAGATGACAGCGAGGCATTTGGGAAGGCATGGAATGAAGCATGTTCTAGAGGGGCCATCCTTGTGGTACCTCAAAATAGGATCTATCGTCTTAAGCCAATAACATTTTCTGGTCCATGTCGACCCAACACTGCCTTTATGGTCTATGGCACAATCGAGGCATGGAATCAAATGTCGGCATACCAAGAAGATAGACGACACTGGATTTTGTTTGATAGTGTTTCAAATTTTAGAGTTGGTGGTGGTGGCACAATCAATGGCAAAGGGAAAAAGTGGTGGCAAAGCTCCTGCAAATTCAACACTAACCTTGCCGTGACTTTCTATCAATGCAACAATTTGAAAGTGACAAAGCTGAGGTTTAAAGATGCACCGCAAATGCATGTAACCTTTGAAGGATGCTTCGATGTTATTGTTTCAAATCTCGTCATCAGAGCACCAGGTGACAGCCCCAACACCGATGGAATTCATGTCGCATACACACAAAATATTGTCATTAGCAACACTGACATTGGGACAGGTGATGATTGTATTTCAATAGTAAGCGGATCCCAAAACGTACGAGTCACAGATATTACCTGCGGACCTGGACATGGAATAAGCATTGGAAGCTTGGGAGCTGATAACTCAGAAGCTGAAGTCTCGAATGTGGTGGTGAACAGAACAACCTTAACAGGAACAACTAATGGAGTGAGAATAAAGACTTGGCAGGGAGGTTCTGGTTATGCAAGGAACATCAAATTTTTGAACATAGCGATGCAAAATGTGACAAATCCCATAATCATAGATCAACACTACTGCGATCAAACGAAGCCATGCCAAGAGCAGGACTCGGGTGTGAAATTAAGCAATGTGTTATACCAAAACATAAGAGGAACAAGTGCCTCAGAAGTGGCTATCAAATTTGACTGCAGCCGAGCCGTTCCTTGCAGACAAATCTACCTGCAGGATGTGATTTTAGAGCCCCAAGGCCATGGACATGGTGGCACCATTGCTACATGTGAAAATGTTAGATATGTTAACAGAGGAAACTTTTTTCCTCAATGCACTCCATGA 1302 0.4217 MSPQTPTISLFIILASLVIVLCNGYYIEGSFYKTNAKHYPVHDGRLNIKTKHEHFGLMTRATHLSSRPRGTVSVDAFGAKADGRDDSEAFGKAWNEACSRGAILVVPQNRIYRLKPITFSGPCRPNTAFMVYGTIEAWNQMSAYQEDRRHWILFDSVSNFRVGGGGTINGKGKKWWQSSCKFNTNLAVTFYQCNNLKVTKLRFKDAPQMHVTFEGCFDVIVSNLVIRAPGDSPNTDGIHVAYTQNIVISNTDIGTGDDCISIVSGSQNVRVTDITCGPGHGISIGSLGADNSEAEVSNVVVNRTTLTGTTNGVRIKTWQGGSGYARNIKFLNIAMQNVTNPIIIDQHYCDQTKPCQEQDSGVKLSNVLYQNIRGTSASEVAIKFDCSRAVPCRQIYLQDVILEPQGHGHGGTIATCENVRYVNRGNFFPQCTP 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0121 433 Pfam Glycosyl hydrolases family 28 104 420 IPR000743 GO:0004650|GO:0005975
Aed5g0121 433 SMART pbh1 216 242 IPR006626 -
Aed5g0121 433 SMART pbh1 325 346 IPR006626 -
Aed5g0121 433 SMART pbh1 296 317 IPR006626 -
Aed5g0121 433 SMART pbh1 243 264 IPR006626 -
Aed5g0121 433 SMART pbh1 266 286 IPR006626 -
Aed5g0121 433 SUPERFAMILY Pectin lyase-like 63 432 IPR011050 -
Aed5g0121 433 PANTHER POLYGALACTURONASE 6 432 - -
Aed5g0121 433 Gene3D - 57 428 IPR012334 -
Aed5g0121 433 PANTHER - 6 432 - -
Aed5g0121 433 ProSitePatterns Polygalacturonase active site. 273 286 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0121 Aed-Chr5 917226 919525 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0121 31 432 Glycoside Hydrolase AT3G07970 56.068 1.02e-153 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0121 K01184 - gmx:732596 785.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0121 5 917226 919525 Aed1g0027 1 784109 789473 PCT