Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0117 ATGGCCAAAAAGAAGAGCTGGTTTAGTCTGGTGAAGAGGCTCTTTATATGGGACACTCATTCCACACAAGATAAGAAGGAGAAAAGAAGGAAATGGATATTTGGAAGGCTAAAGAGCAAGAGATTACCTTCAATTAAAGCTCCACTTTCATCAAAAGGAACAACTCAAAGCGAAGCAGAGGAAGAACAGAGCAATCATGCTTTAACAGTGGCCATTGCCTCAGCTGCTGCTGCTGAAGCTGCTGTTACTGCTGCTCATGCAGCTGCTGAGGTTGTTCGCCTCACTGGGGTCTCACCATCTTCCCTTCAGCGCAAGGAAAACCCAGAAGAATCTCAACTTGTTAATACTAGGAATGGTGTTCCTCAATCCACATACCAAAGCCAGAGGGAGATTAAAGAATCTACTGCAGCCATCAAAATTCAAACTGCATTTCGAGGTTACCTGGCAAGGAAGGCTTTGAGGGCATTGAAGGGAATAGTGAAGCTTCAAGCTATCATTCGTGGCAGAGCAGTAAGACGCCAAGCTATGAGTACTCTAAAGAGCTTACAGTCCATTGTGAGTATCCAGTCACAGGTATGTGCAAGGAGGCTCCAAATGGTTGAAGGGAGATGTGATTACGCTGAAAATGAAGAGATGCAAGATTCTAAAGACAAGATCATTAGGATGGACTCAAACAGTGTATTGAAGGAAGAGGCAGACACATCTTGCAGAAACACAAGCAAGACTAAGAGAGAGAGAATAAAAGAATACTCATTTAACCATAGAAGATCAGCAGAGTCAGAAAGAAGTAAGGTAAATGGAAGATGGAGGTACTGGCTAGAGCAGTGGGTAGATACACAACTTTCAAAAAGTAAAGAACTTGAAGATTTAGACTCATTATTTAGCTCACATTCAAGAGGAGCTGGGGAGGAATTTGGAATTGGAGGAAGGCAACTTAAGCTGAGAAGTATTCAGAGACAAAGTCCAGTTGAAGGATTAGATTCTCCAATAAGAAGATGTTTTCCTCACAGGAGGCAGTGTTCAGTGGGAGAAGACCACTCATATTCAAGCTCTCCTGCAACTCCAGCATACATGGCTGCAACAGAATCAGCAAAAGCAAAAGCAAGATCAACAAGCTCACCAAAAATAAGGAATGTGGACATGAACTCTGATAGCTGCTATTCACCATGCAAGAAAAAGCTATCCATTTCATCTTCTATTAACACTGAAGTAGTGCTTAGTAGTGGTAGGATGAACCAGCAAAGATCTCCAAGCTTTAAGGGCCTTTCAGTGCCTATAAAATCAAGCCGAACTACGATCAAGGATCTCAGTATTAATTCAGATTGCTCACTGCCTAATTGGGATCGACAAGCTTCCTTCAAATGA 1365 0.4234 MAKKKSWFSLVKRLFIWDTHSTQDKKEKRRKWIFGRLKSKRLPSIKAPLSSKGTTQSEAEEEQSNHALTVAIASAAAAEAAVTAAHAAAEVVRLTGVSPSSLQRKENPEESQLVNTRNGVPQSTYQSQREIKESTAAIKIQTAFRGYLARKALRALKGIVKLQAIIRGRAVRRQAMSTLKSLQSIVSIQSQVCARRLQMVEGRCDYAENEEMQDSKDKIIRMDSNSVLKEEADTSCRNTSKTKRERIKEYSFNHRRSAESERSKVNGRWRYWLEQWVDTQLSKSKELEDLDSLFSSHSRGAGEEFGIGGRQLKLRSIQRQSPVEGLDSPIRRCFPHRRQCSVGEDHSYSSSPATPAYMAATESAKAKARSTSSPKIRNVDMNSDSCYSPCKKKLSISSSINTEVVLSSGRMNQQRSPSFKGLSVPIKSSRTTIKDLSINSDCSLPNWDRQASFK 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0117 454 SMART iq_5 132 154 IPR000048 GO:0005515
Aed5g0117 454 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 176 IPR027417 -
Aed5g0117 454 PANTHER IQ-DOMAIN 5-RELATED 5 440 - -
Aed5g0117 454 PANTHER IQ-DOMAIN 11 5 440 - -
Aed5g0117 454 MobiDBLite consensus disorder prediction 98 128 - -
Aed5g0117 454 Pfam IQ calmodulin-binding motif 136 154 IPR000048 GO:0005515
Aed5g0117 454 Pfam Protein of unknown function (DUF4005) 345 414 IPR025064 -
Aed5g0117 454 ProSiteProfiles IQ motif profile. 157 184 IPR000048 GO:0005515
Aed5g0117 454 Gene3D - 132 201 - -
Aed5g0117 454 ProSiteProfiles IQ motif profile. 133 161 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0117 Aed-Chr5 870396 874021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0117 1 454 IQD Protein Family AT5G13460 45.175 3.41e-100 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0117 - - gmx:100800192 706.442