Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0102 ATGGGCAAAGCAGCAAGTCTTCTATCCTTTCTCATTCTTTCAGTATTTGTGGCTCAAACCTATGCCAATAATAACAGACAAGTTGAAGCTCTTAACAAACTGCACAAGTCCAAGTCCAAGTCCAAGTCCAGAGGAATTTCACAAACTACGAGTAGTAGTGAGTTTGAGGTAGAGGAGGTTGTTTATGATGGCATTGTTGATTCTCAAGAGGGTCTCAAAGACAAAGACAGAATTGAGAAGCTTCCAGGACAACCCCCTGTGAGTTTTTCTCAGTATGGAGGCTATGTCACTGTTGATAAAGTGGCTGGTCGTGCCTTCTTTTATTACTTTGTTGAAGCTCAACAACGTTCTAAACAAAAACTCCCACTTCTTCTTTGGCTCAATGGAGGTCCTGGATGTTCATCTCTTGCCTATGGAGCAATGCAAGAACTTGGACCTTTTAGAGTAAACAGTGATGGAAAAACACTACACAGAAATATATTTTCATGGAACAAAGTTGCAAATGTCTTATTCCTGGAGTCACCAGCTGGAGTAGGATTTTCCTATTCAAACACATCAAAAGATTATGATACCAATGGAGATAAGAAAACAGCTGCAGACAATTATTTATTCTTGGTGAATTGGTTGGAGAGATTTCCAGAATATAAGGACAGAGATTTCTATGTTTCTGGGGAAAGCTATGCTGGACATTATGTGCCTCAACTTGCACATACCATTCTCTATCATAACAAAAAAGCAAATAAGAAAATCATCAACCTCAAAGGAATCTTGATTGGGAATGCAGTGATCAACGATGAAACTGACTTGGACGGACTTTATGATTATCTTGCTAGCCATGCAATAATCTCAGACAAAGCAGCTTATATAAACAAAGCTTGTGATTCCTCCTCCTCATCAAAGATTAAGCAAAGTGTGTGCGATGCTGCCGGAAATGAAGTTGGGGAGAATATTGAATACATTGATTTATACAATATTTATGCTTCACTTTGCAAGAATGAAAATCTCACTGCCATACCCAAAAAGAACTCAATAGTGACTGATCCATGCAGTGAGAATTATGTGTATGCATATCTTAATAGAAAAGAGGTTCAAGAGGCTCTCCATGCAAATGTCACCAACCTCAAATATGACTGGGAACTCTGCAGCGATGTCATTAAGTATGTAGAGAGCGCTTCAACAGTCCTTCCACTTTTACATGAATTCCTCAACAATAGCCTCAGGGTTTGGATTTTCAGTGGTGACACAGATGGAAGGGTGCCTATTACTTCAACAAAGTATTCGGTTAAGAAGATGAACCTTCCCGTTGAAACCATTTGGCACCCTTGGTTTTCCTATGGAGAGGTTGGTGGGTATGTAGAAGTATACAAAGGAGGGTTAACATTAGCTACAGTGAGAGGAGCAGGGCATCAAGTGCCAAGTTACCAACCAGCAAGGGCCATTACTTTGATCAAATCTTTCTTAGACGGCACTCCTCTTCCTCCTCCTCCCAAGAGAAATGACTGA 1503 0.4019 MGKAASLLSFLILSVFVAQTYANNNRQVEALNKLHKSKSKSKSRGISQTTSSSEFEVEEVVYDGIVDSQEGLKDKDRIEKLPGQPPVSFSQYGGYVTVDKVAGRAFFYYFVEAQQRSKQKLPLLLWLNGGPGCSSLAYGAMQELGPFRVNSDGKTLHRNIFSWNKVANVLFLESPAGVGFSYSNTSKDYDTNGDKKTAADNYLFLVNWLERFPEYKDRDFYVSGESYAGHYVPQLAHTILYHNKKANKKIINLKGILIGNAVINDETDLDGLYDYLASHAIISDKAAYINKACDSSSSSKIKQSVCDAAGNEVGENIEYIDLYNIYASLCKNENLTAIPKKNSIVTDPCSENYVYAYLNRKEVQEALHANVTNLKYDWELCSDVIKYVESASTVLPLLHEFLNNSLRVWIFSGDTDGRVPITSTKYSVKKMNLPVETIWHPWFSYGEVGGYVEVYKGGLTLATVRGAGHQVPSYQPARAITLIKSFLDGTPLPPPPKRND 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0102 500 Gene3D - 394 489 - -
Aed5g0102 500 ProSitePatterns Serine carboxypeptidases, serine active site. 222 229 IPR018202 GO:0004185
Aed5g0102 500 ProSitePatterns Serine carboxypeptidases, histidine active site. 459 476 IPR033124 GO:0004185
Aed5g0102 500 Gene3D - 349 385 - -
Aed5g0102 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 208 233 IPR001563 GO:0004185|GO:0006508
Aed5g0102 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 159 171 IPR001563 GO:0004185|GO:0006508
Aed5g0102 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 172 182 IPR001563 GO:0004185|GO:0006508
Aed5g0102 500 PRINTS Carboxypeptidase C serine protease (S10) family signature 459 472 IPR001563 GO:0004185|GO:0006508
Aed5g0102 500 PANTHER CARBOXYPEPTIDASE 8 492 - -
Aed5g0102 500 SUPERFAMILY alpha/beta-Hydrolases 73 494 IPR029058 -
Aed5g0102 500 Gene3D alpha/beta hydrolase 73 332 IPR029058 -
Aed5g0102 500 Pfam Serine carboxypeptidase 82 489 IPR001563 GO:0004185|GO:0006508
Aed5g0102 500 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 8 492 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0102 Aed-Chr5 760711 764886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0102 357 492 Calmodulin-binding Proteins AT2G22960 30.216 5.61e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0102 K16297 - gmx:100804815 805.438