Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0090 ATGAAGAGATTGAGGTCGAGCGAGGATCTCCACTCATACGGTGGAGAAAAGAGCAATGGTTGCAAGGATTCGAACAATCTGAACCGTTCGTTTTCGTCGGCGCAGCGGAGCTTCTACTACAAGCCGGATAATGCGCGCAAGGGTTTGGTCTCGTCCTCGTCGTCCTCGTCGCGGTACGAGAGGGATCGAACGGTGGAGGAGGATCGGGATGGTTCGAGGCTGGTTCGGAAGCGATCGGAGCACGATTTCGAGGGTTTCGATCGGAGGAAGGGCTTCGATCGGTACAGGGAGGGTGACCGGAGTTTGATTCACCGGTCGGAGAGTTTCTGCGGAGGCGGTTCGCGGCGGGATCAGTTTCCGAAGGGGTTTCGGTCGGAAAGGGAGCGGTCGCGGAGGGAGGGTAGCGTGTCGTCGTGGCGGAGAGGGTTGAAGGATTTGGATGACAGAGAGAGGGTGGTGCGTTCCCCTAAGGGTTTGAGGGACGTGAAGTCTCCTTCGTGGTCGAAGGATTCTGTTTCTGAGAGCGAGCAATCGAAGAAGAGATCTTCTTCTTCTCCGAGGCCCTTCAGAGATGGTAACTCCATCAAGTCTAAGTCGAAGTCTCCCACTTGGTCTAAGGATTCGGAGAGCGAGCAATCTAAGAGTGTTGAGGTGAAGAAGGCTGAGGAGGAGTTGTTGCAGCAGGTTCAGAGTGGGAGTGAGATGGAGGAAGGGGAGCTTGAGCCTGAACCCCAACCGGAAACGGTTCCTCCTTTGAGTGCTATGGAGACTGATGATGAGAAGCAACTTCAGAAGAATGAATGCCACCCTAATGATGATGGCATTGATGCTGCCCTGGATGAGAGTAAGGAGGAAGGGAAACCTAATGAGGAGGTTGGTTGTTGTGAGGTAAAGGATGGAGAGAAGAAAGAAGCTGATGAGCTGGCAGATGATCAGACTGACAGAATGCTTGTTACTGAGACTGAAGTTGAGTCTGTGATTGTGGGTAATGGTGATGATGATCAAAAGGAGGAGGGTTTGGATGCCGGTGCTGAGTTCAAGGAGGAAACAAAGAAGGGCGCGGATGTGGAGAAGGAGAATGAGAAGGTGGTGTTGAATGAAGATGAAGAGGAGGATAAGCAGCGCAAGGACAAGGGTGTAGAGCTGGGAACCAGCACGGATGGTGTCAAACCTGAGTTAAATGACGGAGTACCAACAGGCAATGAGATTCTCAAGGAAGTGGAGAGTGTGATCAAGAATGCAAAGGATAAAGGCAAAGGCGTCTCTATTGCAATAGCGCCTCCTACTGATGTTGCTCATTCTTCGGAAGAAGGGTTGTGGTTGGATAGAGGGTCGAGAGACATCCCGACGTGTTCTTTTGATGTTATAGAAGGTCCAAGCACAATGGGATTCGAGTTGTTTTCCAGATCTCCTGTTAGGAAAGTGGAGAAAGTAGATCACTCAGTTCTCAACAAGCACAAGGATGACATGGAGCAGCTTGATCTCACTCTCAGCCTGCCAAATGTTCTGTTACCTATTGGTGCTAATGAGACCGCCACTCATGAGACAGCATCGCAAGCCCCTGGATCCCCAAGTCAAGCACGGAGTGTGCAGTCTTTAAGTAATACATTTTGTACTAACTCAGATGGTTTTACTGCATCGATGTCCTTTTCAGGTTCCCAATCATTCTATCATAATCCAAGCTGTTCTCTGACAAAAAATTCAGTGGACTATGAACAATCTGTTGGCAGTCGCCCCTTATTTGGGGGAATAGATCAAGTTTCCCAGGGTTGTTGGCAAGGGCAGTCTCAGAGTGATCCCAAACAGAAAGAAGTTCCTTTTAGTCTAAGAACCCCGGTAAATGGAAATGGCTCCCTTTTCCAGTCTCAGGCATCATGGGGTGTTTTAGACAATCAAGCTGTGAAGGGTCAACATTCCAAGGTTCTAGAAGGAAGTTCAAAAATGGGCAGCGGACTTGACAGGCAATTGAGTTTTCATAAGCAGTTTTCAGGGCAGTCAAGACACCATGATGATGTTAGATCTCCGTCACAGAGTGTTGGGTCTCATGATATTGGATCAAATTATAGCTTTGAGAAAAAAAGAGAGGTAAGAGACAGGAGTAGTGGTAGTCTGTATCGAACTACCAGCCAGAAGGAACAAGAACAACTTCTGATGGGTGGAGTTGATTTTGTTGAGACAATCATTGCAAGAATTGTTTCTGAACCTGTTCATGCAATGTCCAGAAAGTTTCATGAAATGACCGGACAGTCCATAATATGTCTGAAAGAGGGTATTCGTGATATCATGCTTAATGCAGACAAGCACGGGCAGATACTTGCTTTTCAAAAAGTTCTGCAGAACAGGTCTGATATAATCTTGGATGTCCTATTGAAGTGCCACCGAGTGCAACTGGAAATTTTGGTTGCTTTAAAAACTGGTTTGACTCATTTTCTTCACCTAGAAGGCAGCATTTCATCTTCTGAGTTGGCTCAAATTTTTCTGAACTTAAGGTGTAAGAATCTCTCGTGTCGAAGTCAGTTGCCTGTGGACGAATGTGATTGCAAGGTTTGTGTACAAAAGAATGGTTTTTGCAGGGAATGTATGTGCCTTGTGTGTTCAAAGTTTGACAATGCTTCAAATACATGCAGTTGGGTTGGATGTGATGTTTGCCTTCATTGGTGCCATACTGACTGTGGATTACGGGAATCTTATATTAGAAATGGGCATGGGACAAAAGGGATGACTGAGATGCAGTTTCACTGTATTGCTTGTGATCATCCTTCTGAGATGTTTGGCTTTGTCAAGGAGGTATTTCATAATTTTGCAAAAGGATGGTCAGTTGAAACCCTTTGCAAAGAGCTTGAATATGTGAAGAGAATTTTTTCTGCCAGCAAGGATATGAGAGGGAGACAGTTGCATGAGATTGCAGAGCTAATGCTACCAAGGTTGGCAAATAAGTCTAATCTTCCTGAGGTTTTGAGGCACATCATGTCTTTCCTTTCGGATGGTGATTCTTCCAAATTACCCATGACAACAAACTTTTCTGGGAAGGAACAAATTAAAGAAAACAGTGGAGTAGCTGGGCCCAGCCAGGAAGCAGCTTGGATGAAATCTATTTATTCAGAAAAGCCACCTCTGTTAGAAAGGCCTGCAAATATCCTTCCTTCCTTTGACCAGAATGATAAAAGAACTCTTGTGCAAGAATTGCAGATGAGTAGTATCCAGAAGGACTTCTGTTTTGATGAATTGGAGAGTATAGTTAAAATTAAACAGGCAGAGGCTAAAATGTTTCAATCACGTGCTGATGATGCTAGAAGAGAAGCTGAAGGGTTAAAGCGGATTGCCCTTGCCAAGAATGAGAAAATTGAGGAAGAATATACCAATCGAATTGCCAAGTTACGATTGACTGAGACTGATGAAATTCGTAAACAAAAATTTGAAGAAGCCCAAGCATTAGAGAGGGCACATCTGGAGTATTTGAACATGAAAATGAGAATGGAGACAGACATTAAAGATCTGTTATCCAAAATGGAAGCTACCAAAATGAGCCTTGCCATGTGA 3540 0.4545 MKRLRSSEDLHSYGGEKSNGCKDSNNLNRSFSSAQRSFYYKPDNARKGLVSSSSSSSRYERDRTVEEDRDGSRLVRKRSEHDFEGFDRRKGFDRYREGDRSLIHRSESFCGGGSRRDQFPKGFRSERERSRREGSVSSWRRGLKDLDDRERVVRSPKGLRDVKSPSWSKDSVSESEQSKKRSSSSPRPFRDGNSIKSKSKSPTWSKDSESEQSKSVEVKKAEEELLQQVQSGSEMEEGELEPEPQPETVPPLSAMETDDEKQLQKNECHPNDDGIDAALDESKEEGKPNEEVGCCEVKDGEKKEADELADDQTDRMLVTETEVESVIVGNGDDDQKEEGLDAGAEFKEETKKGADVEKENEKVVLNEDEEEDKQRKDKGVELGTSTDGVKPELNDGVPTGNEILKEVESVIKNAKDKGKGVSIAIAPPTDVAHSSEEGLWLDRGSRDIPTCSFDVIEGPSTMGFELFSRSPVRKVEKVDHSVLNKHKDDMEQLDLTLSLPNVLLPIGANETATHETASQAPGSPSQARSVQSLSNTFCTNSDGFTASMSFSGSQSFYHNPSCSLTKNSVDYEQSVGSRPLFGGIDQVSQGCWQGQSQSDPKQKEVPFSLRTPVNGNGSLFQSQASWGVLDNQAVKGQHSKVLEGSSKMGSGLDRQLSFHKQFSGQSRHHDDVRSPSQSVGSHDIGSNYSFEKKREVRDRSSGSLYRTTSQKEQEQLLMGGVDFVETIIARIVSEPVHAMSRKFHEMTGQSIICLKEGIRDIMLNADKHGQILAFQKVLQNRSDIILDVLLKCHRVQLEILVALKTGLTHFLHLEGSISSSELAQIFLNLRCKNLSCRSQLPVDECDCKVCVQKNGFCRECMCLVCSKFDNASNTCSWVGCDVCLHWCHTDCGLRESYIRNGHGTKGMTEMQFHCIACDHPSEMFGFVKEVFHNFAKGWSVETLCKELEYVKRIFSASKDMRGRQLHEIAELMLPRLANKSNLPEVLRHIMSFLSDGDSSKLPMTTNFSGKEQIKENSGVAGPSQEAAWMKSIYSEKPPLLERPANILPSFDQNDKRTLVQELQMSSIQKDFCFDELESIVKIKQAEAKMFQSRADDARREAEGLKRIALAKNEKIEEEYTNRIAKLRLTETDEIRKQKFEEAQALERAHLEYLNMKMRMETDIKDLLSKMEATKMSLAM 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0090 1179 PANTHER PROTEIN OBERON 4 1 1178 - -
Aed5g0090 1179 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 1178 IPR004082 -
Aed5g0090 1179 Coils Coil 1080 1118 - -
Aed5g0090 1179 MobiDBLite consensus disorder prediction 103 399 - -
Aed5g0090 1179 MobiDBLite consensus disorder prediction 1 16 - -
Aed5g0090 1179 MobiDBLite consensus disorder prediction 59 80 - -
Aed5g0090 1179 Pfam Coiled-coil region of Oberon 1052 1167 IPR032535 -
Aed5g0090 1179 MobiDBLite consensus disorder prediction 258 318 - -
Aed5g0090 1179 MobiDBLite consensus disorder prediction 1 28 - -
Aed5g0090 1179 MobiDBLite consensus disorder prediction 187 201 - -
Aed5g0090 1179 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 781 796 IPR004082 -
Aed5g0090 1179 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1074 1094 IPR004082 -
Aed5g0090 1179 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 742 764 IPR004082 -
Aed5g0090 1179 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 796 811 IPR004082 -
Aed5g0090 1179 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 938 957 IPR004082 -
Aed5g0090 1179 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 868 888 IPR004082 -
Aed5g0090 1179 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 1113 1135 IPR004082 -
Aed5g0090 1179 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 822 843 IPR004082 -
Aed5g0090 1179 MobiDBLite consensus disorder prediction 329 383 - -
Aed5g0090 1179 MobiDBLite consensus disorder prediction 42 80 - -
Aed5g0090 1179 MobiDBLite consensus disorder prediction 119 158 - -
Aed5g0090 1179 Pfam PHD - plant homeodomain finger protein 831 951 IPR032881 -
Aed5g0090 1179 MobiDBLite consensus disorder prediction 661 709 - -
Aed5g0090 1179 MobiDBLite consensus disorder prediction 687 701 - -
Aed5g0090 1179 MobiDBLite consensus disorder prediction 202 224 - -
Aed5g0090 1179 CDD PHD_OBE1_like 861 917 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0090 Aed-Chr5 671557 676987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0090 831 972 PHD Gene Family AT5G57380 28.169 5.83e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0090 - - gmx:100817003 2024.59