Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0081 ATGGAAGCGGCTGTGGTGGACGTCGGCTCTAAGCTCCTCAAAGCGGGCTTTGCAATTCCCGACCAGACTCCTGCCATGATAATTCCCACTCAGATGAAGCAATTTCTCGATGATGGATCAGTCACTACTGATAATTCAGTGTCTGACAGTGTCACAGTTGATCCCGTCCTGCGAGGATTTATTAGAGATTGGGATGCCATTGAGGATTTGTTGCACCATGTTTTGTATACTGGCCTTGGATGGGAAATTGGCAATGAAGGACAAATACTTTTTACAGATCCACTTTGTACCCCTAAGGCTAACAAAGAACAGTTGGTGCAACTAATGTTTGAAACATTCAACATATCAGGGTTTTATGCCTCAGAACAAGCTGTGTTATCACTGTATGCTGTTGGACGTATCTCAGGCTGCACTGTTGATATTGGACATGGAAAAATAGATATTGCACCGGTAATTGAGGGTGCTGTTCACCACATTGCCTCAAGAAGATTTGAGTTTGGAGGTACTGATCTAACTAATTTCCTGGCTCAAGAACTTGGCAAGTCCAATCCACAAGTAAATATCAGCATGTCCGATGTGGAGAAAATAAAAGAACTGTACTCATGCTGTGCTGAAGATGAATTAGCTTATCAGAAGACCCAATATTCTTGTCCAGTGGAGAAGCACACCCTTCCTGATGGACAGGTGATAACAATTGGGAGAGAAAGATATACTGTTGGGGAAGCTTTATTCAAGCCATGTCTACTGGGTTTAGAGGCTCATGGCATTGTTGATCAGCTTGTCCGTGCTATTTCAACTGTGTCATCTGATAATCAACGGCAGCTGCTAGAAAATACTGTGGTTTGTGGTGGCACTTCTTCTATGATAGTAACTTCTGGCAGGCTAATGCTGCTTCTCGTTGCAGGTTTTGAAGAGAGATTTCAGAAGGAATCTAGCTTAAGTTCATCTGCTGTTCAACCTACTCTCGTTAAGCCTCCAGAATACATGCCAGAAAATTTAACCATGTATTCTGCATGGGTGGGAGGTGCCATACTTGCCAAAGTGGTTTTTCCTCAAAATCAGCATATAACTAAGGCAGACTATGATGAAACCGGACCTTCCATTGTTCACCGGAAATGCTTCTGA 1125 0.4311 MEAAVVDVGSKLLKAGFAIPDQTPAMIIPTQMKQFLDDGSVTTDNSVSDSVTVDPVLRGFIRDWDAIEDLLHHVLYTGLGWEIGNEGQILFTDPLCTPKANKEQLVQLMFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVHHIASRRFEFGGTDLTNFLAQELGKSNPQVNISMSDVEKIKELYSCCAEDELAYQKTQYSCPVEKHTLPDGQVITIGRERYTVGEALFKPCLLGLEAHGIVDQLVRAISTVSSDNQRQLLENTVVCGGTSSMIVTSGRLMLLLVAGFEERFQKESSLSSSAVQPTLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKADYDETGPSIVHRKCF 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0081 374 SMART actin_3 1 374 IPR004000 -
Aed5g0081 374 PRINTS Actin signature 101 114 IPR004000 -
Aed5g0081 374 PRINTS Actin signature 218 234 IPR004000 -
Aed5g0081 374 PRINTS Actin signature 126 145 IPR004000 -
Aed5g0081 374 PRINTS Actin signature 46 68 IPR004000 -
Aed5g0081 374 PANTHER BNACNNG31150D PROTEIN 1 373 - -
Aed5g0081 374 Gene3D - 124 337 - -
Aed5g0081 374 SUPERFAMILY Actin-like ATPase domain 132 374 IPR043129 -
Aed5g0081 374 Pfam Actin 2 374 IPR004000 -
Aed5g0081 374 Gene3D - 5 368 - -
Aed5g0081 374 Gene3D Actin; Chain A, domain 4 166 253 - -
Aed5g0081 374 PANTHER ACTIN 1 373 IPR004000 -
Aed5g0081 374 CDD NBD_sugar-kinase_HSP70_actin 4 167 - -
Aed5g0081 374 SUPERFAMILY Actin-like ATPase domain 2 139 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0081 Aed-Chr5 611320 614964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0081 5 374 Cytoskeleton Gene Families AT3G12110 36.434 6.89e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0081 K16615 - gmx:100813266 679.478