Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0073 ATGTATGGAGGAGGGGTTCCCGTTGCATGCAGAACGCGTAGCAAGCGGGGGAGAGTGGTTGGAAGTGGTTTAGTAACGAGGCAGAAGAAGAAAAGGCTGCATAGAGTGATTTTCTTGGAAGGTGAAGGTGAAGGTGCAAGTGTCGTCAATTCTTCTTCTTCTTCTTCATCTTTGAAGCGTGGAAGGGTATCTGAACGAGGTTTTGATTGCTTGGGAGGGCATGCTGGTAACCCTATTGAAATCGGTGACAGTGATGATGAAAAGGATAAAGGGTGTTCCGTGTTTCATGATATAGTTGAAAACCCGGTAATATTGCCGGATGAAAAGGAACGTGGCGATGGCGTGGATATTAAAAGTGCCTCAAAGTCAAATGATGATGAACATGATTCTTTTTTGTCTTTAATGACCAGTGATGAAGATTTTCAGGTTGAGAATGATTGCTACTCGAGCAGTGGTTCTTCTTCTGATGATGATGATGATTATGAGAGGAGGGAGGGATACAGAAAGACGGTGAAGGAGAGGGTGAGTGAAACTGAAAGCAGTAAGGAGGAAGCAATTAGGAAAGTAGAAAGTGTCAATGCTGATGCACAAGCCTTTGGTGATCACTGCTGGGACAGTTCAGGTTGCTCTATGCCTTCTGAAGCTGAAGCACTGGAGCATACGAAGCATAGGAGGAGAGATAGAGATCATCAAAGTGCGTCATTGCAGAAAAAGACAAAATATTTAACTGTGATGATCAACAAGAGTGACAAAAATATTGATGTCAATGCCAATGACTGTGTGAATCTTGATGAACGTGTTTCTCTTTTGCCAAAAAGCCAAGAGAAGATAGGAGATTCAGCTAAAGTTGTAATAAAAAATGACAAGAAGGGAAGAGAGCGTAAATATAATGAGAAGGTAAGGGTGGTGGCTGATGAAAGTACTGGTGACAAAGATGAGCTGCATGAACTCCTTAGGATACCATCTAGAACAAACAACCGATGTTTTAAATATTTTAATGAATCCTTTTGGGTCAAGAATGATTCTGTTAAAGATCATTCAAATCAGTTGGAAGAAAAGGATGATGATGTTAAAGGTCAGGGTCAGACTCAGCCATTAGCTTCTAGGGAAACAGTCCCTTTGAATTGGAACTTTATGAAAAAAAAAACTAATGAAAAATCAGAGTCTGAGAAGGAGTTAGATATCTTGTGGGATGAAATGGATATGTTGCTTCGAGCTGAAGAAATTGGATCTCAGGTTGATAATATAGGGGCAAATGAAGCAAGAGAAAATGAAGAAAATCCAGCCTCACAATGCAAGCATGACACTATTTTTAATGAGGAGATTGGGATATATTGCAGATGGTGTGGTTGGATTGCTACTGAAATCAAATACATCACGCCGCCATTTGTGGATTCTGAAAGGTGTCGTAGAAGAAGGGTGTCATCTGGTGGTGGAATGAACACCTCACAGTTTGATGGGGGGGATCTGTTTAACTTTAATGATTCTGGTGATGAGTTAGAGGCAGTTTGGTCTCACAATGAAGGCACAGTTTGGGACCTTATTCCTGACATTAAACAAAGCTTGTATCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGACAAATTTGACAGGAACCACTGACCTTGCCAAGTTGAAGAGGGTTGACCCGTGTAGTGAAGGTGGGTGCATTGTTTCCCATGCTCCTGGAACAGGAAAGACGAGGTTGACCATGGTGTTTCTTCAGACATATTTGCAATTGTTTCCAAAGTGTCTACCTATTATCATTGCTCCTGCCAACATATTGCTTACATGGGAAGATGAGTTAAGAAAGTGGAACATAGGAATTCCATTCCATAACTTGAACAATTCTTCTGAATTATCAGGAAAAGAGAATCTGTATGCCAATCAAAGGCAGAATAAGGATGCCATACGAATGGTGAAGTTGTGTTCATGGTACAAAGAGAAGAGCATTCTATTAATCAGCTACAATTTGTATGAGAAGTTAGCAGGGGCCACGTCTGAAGGTGATGGGGAAAAGGAGAAGAAAAATAGAAAGATGAAAAAGAAGAAGAAATGTGCAAGGACAAGGGAGTACATTGAAAGTGGAATGGGAAAGGTTCTGCGTGACTATCCTGGTTTGCTAGTTCTTGATGAAGGGCACACTCCTCGGAATCAGAATAGTTATATTTGGAAGGTTCTTTCTGAAAGTAAAACTCCGAAGCGAATCCTTCTTTCGGGGACACCTTTCCAGAACAATCTATTGGAACTTTACAATATTTTGTGCTTAATGAAACCATCCTTTCCTGACAGCATACCCCAAGAACTCAAGAAGTTTTTCCAAAGTAGACTAATGCAGGAAAGGAAAGCTTCAAAATATGCTACTAATTGGGATTGGGCACCTGTTTCGTCTGGCAATACAGCTGGTGAGAAAATAAATCAGCTAAAATTGCTGATGAATCCCTTTGTTCATGTTCATAAAGGTAGCATTCTTCAGAAGAACCTTCCTGGGCTGAGAGATTGTGTTCTTGTTTTGAAGCCAGACAGTTTGCAGCAAGAAACTCTACAGAGCATTGAATGTTCTCAAAGTGCACTTAACTTTGAACACAAGTTGGCCTTGGTCTCCGTCCATCCATCCCTTTTCCTCAACTGCTCTCTGTCAAAAAAAGAAGAATCTCTTGTTGACAAGGATAAGTTGGAAAAGCTTAGAATGAACCCTTATGGAGGGGTCAAAACCAAATTTCTGATTGAGCTTATAAGACTATGTGATGCAGTTAATGAGAAAGTCCTCGTTTTCAGCCAATTCATTGATACCTTGTGCTTAGTTAAAGACCAACTCGAGTCAGCTTTCAATTGGTCTGTGGGGACGGAAGTGTTGTATATGTATGGCAGCCTCGACCAAAAGCAAAAACAGTCCCTCATTCATAGTTTCAATGATTCAAATAGCCAAGCAAAGGTGTTGCTTGCTTCTATAAAAGCATCTTCCGAAGGCATTAACTTAGTTGGAGCTTCAAGGGTCGTGCTTCTTGATGTTGTTTGGAATCCCTCGGTGGAAAGGCAAGCTATTTGCCGAGCATATAGACTTGGACAAAAGAGAGTTGTTTTCACTTATCATCTTCTTGCACAGGGCACCCCTGAGTGCACAAAATATTGTAAACAAGCAGAAAAGAACCGGCTATCTGAACTTGTTTTCTCAAATAGAAATGCTGAAAGTGATAATAAGCACAAGAGTGGAGTAATGTCTGAGGATATTGAGGATAGAATTCTTGATCTCATGGTTCAGCATAAAAAACTCAAGGATATGTTTGGTGAATGTCTGGTTCAACCAAAGGAGGGTCCCTGA 3324 0.407 MYGGGVPVACRTRSKRGRVVGSGLVTRQKKKRLHRVIFLEGEGEGASVVNSSSSSSSLKRGRVSERGFDCLGGHAGNPIEIGDSDDEKDKGCSVFHDIVENPVILPDEKERGDGVDIKSASKSNDDEHDSFLSLMTSDEDFQVENDCYSSSGSSSDDDDDYERREGYRKTVKERVSETESSKEEAIRKVESVNADAQAFGDHCWDSSGCSMPSEAEALEHTKHRRRDRDHQSASLQKKTKYLTVMINKSDKNIDVNANDCVNLDERVSLLPKSQEKIGDSAKVVIKNDKKGRERKYNEKVRVVADESTGDKDELHELLRIPSRTNNRCFKYFNESFWVKNDSVKDHSNQLEEKDDDVKGQGQTQPLASRETVPLNWNFMKKKTNEKSESEKELDILWDEMDMLLRAEEIGSQVDNIGANEARENEENPASQCKHDTIFNEEIGIYCRWCGWIATEIKYITPPFVDSERCRRRRVSSGGGMNTSQFDGGDLFNFNDSGDELEAVWSHNEGTVWDLIPDIKQSLYPHQQEGFEFIWTNLTGTTDLAKLKRVDPCSEGGCIVSHAPGTGKTRLTMVFLQTYLQLFPKCLPIIIAPANILLTWEDELRKWNIGIPFHNLNNSSELSGKENLYANQRQNKDAIRMVKLCSWYKEKSILLISYNLYEKLAGATSEGDGEKEKKNRKMKKKKKCARTREYIESGMGKVLRDYPGLLVLDEGHTPRNQNSYIWKVLSESKTPKRILLSGTPFQNNLLELYNILCLMKPSFPDSIPQELKKFFQSRLMQERKASKYATNWDWAPVSSGNTAGEKINQLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPDSLQQETLQSIECSQSALNFEHKLALVSVHPSLFLNCSLSKKEESLVDKDKLEKLRMNPYGGVKTKFLIELIRLCDAVNEKVLVFSQFIDTLCLVKDQLESAFNWSVGTEVLYMYGSLDQKQKQSLIHSFNDSNSQAKVLLASIKASSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQKRVVFTYHLLAQGTPECTKYCKQAEKNRLSELVFSNRNAESDNKHKSGVMSEDIEDRILDLMVQHKKLKDMFGECLVQPKEGP 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0073 1107 MobiDBLite consensus disorder prediction 142 186 - -
Aed5g0073 1107 Gene3D - 499 795 IPR038718 -
Aed5g0073 1107 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 911 1086 IPR001650 -
Aed5g0073 1107 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 6 1105 - -
Aed5g0073 1107 MobiDBLite consensus disorder prediction 217 235 - -
Aed5g0073 1107 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 548 761 IPR014001 -
Aed5g0073 1107 Pfam Helicase conserved C-terminal domain 907 1023 IPR001650 -
Aed5g0073 1107 Pfam SNF2-related domain 530 851 IPR000330 GO:0005524|GO:0140658
Aed5g0073 1107 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 6 1105 IPR044567 GO:0080188
Aed5g0073 1107 SMART helicmild6 938 1023 IPR001650 -
Aed5g0073 1107 Coils Coil 168 188 - -
Aed5g0073 1107 CDD SF2_C_SNF 905 1034 - -
Aed5g0073 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 778 IPR027417 -
Aed5g0073 1107 MobiDBLite consensus disorder prediction 103 130 - -
Aed5g0073 1107 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 706 1064 IPR027417 -
Aed5g0073 1107 MobiDBLite consensus disorder prediction 156 186 - -
Aed5g0073 1107 SMART ultradead3 518 769 IPR014001 -
Aed5g0073 1107 Gene3D - 830 1098 IPR027417 -
Aed5g0073 1107 MobiDBLite consensus disorder prediction 217 236 - -
Aed5g0073 1107 MobiDBLite consensus disorder prediction 347 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0073 Aed-Chr5 551809 555658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0073 921 1053 RAD5 or RAD16-like Gene Family AT5G43530 40.602 2.07e-18 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed5g0073 SNF2_N 2e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0073 K10875 - gmx:100812737 1470.68