Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0069 ATGATGATGGGGGAATCGAGTTCTAGTAGGGTTTCCCACACTGTTCAGCATCCCACCGCAGGCATCGTCAAGAGACTTCGACTCGAGAATTTCATGTGCCATTCCAAACACGAGACTGAGTTCGGAAACCACGTCAATTTCATCACCGGTCAAAACGGAAGTGGTAAGAGTGCAATCCTAACTGCACTGTGTGTTGCTTTGGGCTGTCGAGCCAAAGGGACTCAAAGGGCTTCCACTTTGAAGGATTTCATCAAAACTGGTGCCACTAATGCTGTCATCCAAGTTGAAATTCAAAATGAAGGAGAGGATGCTTTTAAACCTGATACATATGGTCCTCTTATCATTGTTGAACGTAGAATATCTGAATCCACAAGTTCTACTACCTTGAAAGACCACCAAGGAAGGAAAGTTGTCAGTCGGAAAGCAGATCTTGTAGAAATCGTTGAACATTTTAATATTGATGTGGAGAATCCATGTGTAATTATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCTGGGAATAATAAGGACAAATTTAAGTTCTTTTACAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTCCAATGAAATAACTGTTGCACATGTAGTAGTTGAAGAATTAGAGACTGCAATAAGGCCCATAGAGAATGAGCTTAATGAGCTGCAAGTTAAAATTAGAAATATGGAACATGTTGAACAAATATCCATACAAGTTCAGCAGTTAAAGAAGAAACTAGCATGGTCATGGGTTTATGATGTGGACAAGCAACTAGAGGAACAAAATGTAATGATTGAAAAGTTGAAGAACCGAATACCTACCTGCCAGGCTAAGATTGATCAACAACTGCATTTAGTTGAAAAGTTGGAGGAAAGCTGGTCCAAGAAGAAAGATGAAATTAACAATATGTTTGAAAAGACATCACAAGTTAAGCAATTGAAGGAAAATTTAAACCAATCTGTGTCCATGGCAAAGAAAGAGGCTTTTGAACTTGAGCGAGACTGCAAATGCAAAACCAGCAACATACAGAAGTTGGTAAAGCAACTTGAAGTGCTTCAACAACAAGTACAGGACATTCGTGAGCAGCATGAAAAAAATACTCAGGCTGAAGAATCTAACCTGGAGGAGAAACTGAAGGGGCTTAAAGATGAGGTTCATGCAGCTGAGTCAGAGTTGAAGAGATTGCTAGACGAAGAGGCTTTGTTAATGGATAACATACAAAGGCAAAAAGATGAAGTCCAAAAGATAGCTGATAAGATCAATGGTCATGAAAAAAATCACCATGATTCCATGTGTCAAATCCGTACTCTTCAACAGCAACAAGGCAATAAGATTACTGTTTTTGGAGGAAATAAAGTGTTAGATTTGTTACGTACAATTGAGAGATACCACCAAAGGTTTAAGATGCCTCCAATTGGTCCTATTGGTGTCCATCTGAAGCTTCTTCATGGTAATAAATGGGCACTTGCCGCTGAATTTGCTATTGGGAGATTGCTCAATTCTTTTATAGTGACTGATCATGCGGATTGTCGACTTCTGAAACAATGTGCGAAGGAAGTAAACTATGGTCACCTTCAAATTATTGTTTATGATTTTTCAATCCCAAGGTTGACATTACCACAGCACATGCTTCCTGATACAGAACATCCATCAATTCTTTCTGTCTTACAATGCGAGAATGACACTGTGATTAATGTCTTAGTGGATCAGGGAAATGTTGAGAGACAAGTGCTTGTTAATAATTATGATGTGGGGAAAGTGGTTGCTTTTGAGCGAAGGATCCGAAATTTGAAGGAAGTATATGCAGCCAACGGACTTAGAATGTTTGCTCGAGGTCCAGTGCAGACTGTTCTTCAACCAAATAAGAGGCAAAAAACTGGTCGTCTTTGTGGTTCTGTTGAAGATGCAATTGAGAAACTTCATGTTGAAGCATCTGATGAACTAAAGGCAGCCGATGTTCTTAAAAAGAATAAAAGAAAGGCAGAGATCAGGCTTGCAGATCTTGACAAGAATATGAAATCTATTAAGAGGCAACGTGTAGATGCAGATAAAAGTTTAACTTCTAAGAAGCTAGCGTTGGAGCAGGAGGAAATGCCTTTGCACACTGCTGAAAATAGCGCAACACCTTTGTCCTCTGTTGATGAGCTCATTGAAGAAATTTCAGAGATCCAGAAAAAAATAAAAGAAGAGCAAGTCTTGTTGGAAGGCCTTCAGAAAAAGGGGTGTGAAGCAGCAGGAAAAGCAGATGAACTTAAAGTAAAATTTGACAAACTGTGTGAATCAGCAAATGGTGAATTTGCTGCCTTTGAGAAAGCTGAGAGTGAACTTGTAGAAATTGAAAAAGAAACGGGTTCGGCAAAAAAGGCAAAGGATCATTATGAGGGTATCATGAAAAACAAGGTCCTACTTGATATCAAGGAGGCAGAAGAACACTGTTTGGAGCTTACAAAGATGCGCAAGGAAAGTGTTGAAAAGGCTTCCATAATTTGCTCTGAGAATGAACTTGATTCATTAGGTGGTTGTGATGGGAATACCCCAGAGCAAATCAGTGCAGAATTAGAAAGACTAAATCAGACAATTAGGCGCTTGCCAGAGAGCCTTAGAGTTACGAAAGAGAAAGTTTCAGAGAAATGCAACTTATCTGAAGCACCAGCTTTCTTGGAAGGGATTAGTGGACTTATCAAAGTTAATTATGAAGATAAAACCTTAATGATTGAGGTACAAATGCCGCAAGATGCATCAAACAGAGCTGTTCGAGACACTAGGGGTTTATCAGGTGGTGAGCGTTCTTTTTCAACATTGTGCTTTGCTTTGGCACTTCATGAAATGACAGAGGCCCCTTTTAGAGCAATGGATGAATTTGATGTCTTCATGGATGCAGTAAGCCGAAAAATCAGCTTGGACACCCTCGTTGATTTTGCTGAGGCACATGGATCACAGTGGATATTCATCACTCCGCATGATACTAGCTCGGTGAGGGGAGGGGACAGGATAAAGAAGATGCAAATGGCCGCTCCACGTTCTTGA 3042 0.3994 MMMGESSSSRVSHTVQHPTAGIVKRLRLENFMCHSKHETEFGNHVNFITGQNGSGKSAILTALCVALGCRAKGTQRASTLKDFIKTGATNAVIQVEIQNEGEDAFKPDTYGPLIIVERRISESTSSTTLKDHQGRKVVSRKADLVEIVEHFNIDVENPCVIMSQDKSREFLHSGNNKDKFKFFYKATLLQQVNDLLESISNEITVAHVVVEELETAIRPIENELNELQVKIRNMEHVEQISIQVQQLKKKLAWSWVYDVDKQLEEQNVMIEKLKNRIPTCQAKIDQQLHLVEKLEESWSKKKDEINNMFEKTSQVKQLKENLNQSVSMAKKEAFELERDCKCKTSNIQKLVKQLEVLQQQVQDIREQHEKNTQAEESNLEEKLKGLKDEVHAAESELKRLLDEEALLMDNIQRQKDEVQKIADKINGHEKNHHDSMCQIRTLQQQQGNKITVFGGNKVLDLLRTIERYHQRFKMPPIGPIGVHLKLLHGNKWALAAEFAIGRLLNSFIVTDHADCRLLKQCAKEVNYGHLQIIVYDFSIPRLTLPQHMLPDTEHPSILSVLQCENDTVINVLVDQGNVERQVLVNNYDVGKVVAFERRIRNLKEVYAANGLRMFARGPVQTVLQPNKRQKTGRLCGSVEDAIEKLHVEASDELKAADVLKKNKRKAEIRLADLDKNMKSIKRQRVDADKSLTSKKLALEQEEMPLHTAENSATPLSSVDELIEEISEIQKKIKEEQVLLEGLQKKGCEAAGKADELKVKFDKLCESANGEFAAFEKAESELVEIEKETGSAKKAKDHYEGIMKNKVLLDIKEAEEHCLELTKMRKESVEKASIICSENELDSLGGCDGNTPEQISAELERLNQTIRRLPESLRVTKEKVSEKCNLSEAPAFLEGISGLIKVNYEDKTLMIEVQMPQDASNRAVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAEAHGSQWIFITPHDTSSVRGGDRIKKMQMAAPRS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0069 1013 Pfam RecF/RecN/SMC N terminal domain 23 1008 IPR003395 -
Aed5g0069 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 1002 IPR027417 -
Aed5g0069 1013 Coils Coil 656 683 - -
Aed5g0069 1013 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 10 867 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Aed5g0069 1013 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 6B 893 1013 IPR027132 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Aed5g0069 1013 Gene3D - 727 1010 IPR027417 -
Aed5g0069 1013 Coils Coil 319 431 - -
Aed5g0069 1013 Gene3D - 22 221 IPR027417 -
Aed5g0069 1013 Coils Coil 210 237 - -
Aed5g0069 1013 Coils Coil 718 745 - -
Aed5g0069 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 1006 IPR027417 -
Aed5g0069 1013 CDD ABC_SMC6_euk 917 1013 - -
Aed5g0069 1013 Coils Coil 774 794 - -
Aed5g0069 1013 CDD ABC_SMC6_euk 23 177 - -
Aed5g0069 1013 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 10 867 - -
Aed5g0069 1013 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 893 1013 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0069 Aed-Chr5 498256 524209 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0069 3 1013 Structural Maintenance of Chromosomes family AT5G07660 54.245 0.0 1071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0069 K22804 - gmx:100816916 1650.18