Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0067 ATGAAGGCAAAAGACAGAGAAGGTGGTAGCAATGACTTGCTTGTTCAAACTCAATCTCAAGCTGAGTTCAAGTGCAAGAGGTGCGGGAAAACATCTCAATCTTATCAAGCTCTCGGTGGGCACAAAGCAAACCATAAGAAAAATGAGAATATATGCCAAGAAGATGGTGACTCTAACGATGATGGGAGTGACAAAAATAGTGTTGTTTGTTTTGAGTGTCCATATTGCTCCAAAGTGTTCAAGTCTGCACAAGCACTCGGTGGACACAAGAAGGTACACTCCTCCAAGACTATGATTGATAATGCTCAAACTACTGCTAATCAGTTTGATGGCAAGTTGATAGCTCTTCTGGTTTCTGATAGTTTGTTTGAATCCATTGCTGGAAAAATGACTAGATCTAAGAGAAACACCTCAGAAACTACAGATACCATAAAAGAAGCATCGGACTCACCACCAAAAGTTTAG 465 0.4043 MKAKDREGGSNDLLVQTQSQAEFKCKRCGKTSQSYQALGGHKANHKKNENICQEDGDSNDDGSDKNSVVCFECPYCSKVFKSAQALGGHKKVHSSKTMIDNAQTTANQFDGKLIALLVSDSLFESIAGKMTRSKRNTSETTDTIKEASDSPPKV 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0067 154 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Aed5g0067 154 MobiDBLite consensus disorder prediction 39 64 - -
Aed5g0067 154 Gene3D Classic Zinc Finger 20 93 - -
Aed5g0067 154 SMART c2h2final6 23 45 IPR013087 -
Aed5g0067 154 SMART c2h2final6 71 93 IPR013087 -
Aed5g0067 154 Pfam C2H2-type zinc finger 71 95 - -
Aed5g0067 154 Pfam C2H2-type zinc finger 23 47 - -
Aed5g0067 154 MobiDBLite consensus disorder prediction 42 62 - -
Aed5g0067 154 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 2 110 IPR044303 GO:0006355
Aed5g0067 154 MobiDBLite consensus disorder prediction 135 149 - -
Aed5g0067 154 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 98 IPR013087 -
Aed5g0067 154 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 2 110 - -
Aed5g0067 154 SUPERFAMILY beta-beta-alpha zinc fingers 23 93 IPR036236 -
Aed5g0067 154 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Aed5g0067 154 MobiDBLite consensus disorder prediction 130 154 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0067 19 103 C2H2 Transcription Factor Family AT3G60580 42.697 4.19e-17 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed5g0067 zf-C2H2_6 1.3e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0067 - - ccaj:109798515 139.813