Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0066 ATGAAACCTTTTCTTCTCTTTCTCACATTATTCTCCTTCCTCTCTGCCACAGCCACAGCCACAGCCACTGTCACAACCCTGCCCTTCCAACTCATCGCCCTCCTCTCGATAAAATCATCCCTCCTAGACCCTCTCAATAACCTCCATGACTGGGACCCCACCCCGGCCACATTCTCCAATTCCAATCCTCAACACCACCCAATATGGTGTTCCTGGAGAGGCATCACATGCCACTCCAAAACATCTCAAATCATCACCCTCGACCTCTCCCACCTCAATCTCTCCGCAGCCTCAATCTCACCCCAAATCCGCCACCTATCCACCTTAAACCACCTTAACCTCAGTGGCAATGACTTCACCGGTAGTTTCCAATATGCCATTTTCGAACTAACGGAGCTGAGAACACTAGACATCAGCCACAACTCCTTCAACTCAACCTTCCCACCGGGTATATCAAAACTCAAGTTCCTCCGGCACTTCAACGCCTACAGCAACAGCTTCACCGGGCCCCTCCCCCAAGAGTTATCCACCCTTCGTTTCCTCGAACACCTGAACCTCGGCGGAAGCTACTTCAGCGACGGGATTCCACCCAGTTACGGCACTCTCCCCAGACTCAACTTTCTAGACTTAGCCGGTAACGCCTTGGAAGGTCCACTCCCATCCCAACTAGGCCACTTGGCTCAACTACAACACTTGGAAATTGGATACAACAATTTCTCAGGAACACTACCCTCAGAACTCGCATTGCTCTCTAACCTCACATACTTGGACATCTCAAACACTAACATTTCAGGGAACGTGACCCCGGAGCTGGGAAACCTCACCAAGCTGGAGACCCTTCTGCTGTTCAAGAACCGGCTAACAGGGGAAATACCATCAACCATTGGAAAATTGAAGTCCCTTAAAGGCCTTGACCTCTCAGACAACGAACTTACAGGGCCAATCCCCACTCAAGTCACCATGCTAACCGAATTAACCATGCTCAACCTAATGGACAACAACCTCACAGGGGAAATACCACATGGAATTGGAGACCTTCCTAAGCTAGAGATTCTGTTCCTCTTCAACAACTCACTCACCGGAACCCTCCCTCAGCAACTCGGCTCCAACGGGTTACTACTCAAACTCGACGTTTCCACTAACTTACTCCAAGGTCTAATTCCTGAATATGTGTGCAAAGGTAACAAGCTCGTTAGACTCATACTCTTCCTCAACAAATTCACCGGTTCTCTCCCACCGTCCCTTGCCAACTGCACCTCACTCGCTAGGGTTCGCATTCAAAACAATTTCCTCAACGGTTCTATTCCCCAAGGCCTCACGCTCCTCCCTAACCTGACATTTCTAGATATCAGCAGCAACAACTTCGAGGGTCAAATTCCGGAAACCTTTGGAGCTAACTTGCAGTACTTCAACATCTCCGGAAACTCATTCGGAACCTCCTTACCGGCCTCTATTTGGAATGCTACTAATCTTGCCATCTTCTCTGCTGCTTCATCCAACATCACTGGTCAAATTCCCGATTTCATAGGGTGTCAGGCATTGTATAGGCTCGAATTGCAGGGAAATTCCATCAACGGTACCATTCCGTGGGACATTGGACACTGCCAGAAGCTCATTTTACTGAATCTCAATCGAAACTCACTCACCGGAATTATTCCCTGGGAAATCTCCACTCTCCCTTACATCACCGACGTTGATCTCTCTCACAATTCCCTCACTGGAACTATTCCTTCCAACTTCAACAACTGCTCCACCCTCGAGAATTTCAACGTCAGTTTCAACTCCCTCACCGGTCCAATTCCGTCGTCCGGCATTTTCCCGAACCTACATCCTTCATCCTACTTCGGCAACCAGGGCCTCTGCGGCGGCGTGTTGGCCAAACCCTGCGCCGCCGACGCTTTCTCCGCCTCCGACAACCAGGTTGACGTCCGGCGCCAGCAGCCGAAGCGAACCGCCGGTGCAATCGTGTGGATCGTCGCGGCGGCATTCGGTATCGGGCTCTTCGTGCTGGTCGCCGGGACGCGCTGCTTCCACGCGAACTATAACCGGCGGTTCGGCGACGAGGTAGGGCCGTGGAAGTTAACGGCGTTCCAGCGTTTGAATTTCACGGCGGATGACGTGCTGGAGTGTTTGTCTATGTCTGATAAGATATTGGGGATGGGATCCACGGGAACGGTTTACAGGGCTGAAATGCCAGGTGGCGAGATCATAGCTGTTAAGAAGCTATGGGGGAAGCAGAAGGAGAATATTATCATCAGACGGAGGAGAGGGGTTCTGGCTGAGGTGGAAGTGTTGGGAAACGTGAGGCATAGGAATATCGTTAGATTGTTAGGGTGCTGCAGCAACAAGGATAGCACCATGCTGCTTTACGAGTACATGCCCAACGGCAACTTGGATGATTTGTTGCATGCCAAAAATAAAGGAGATAATTTAGTTGCTGATTGGTTCACTAGGTATAACATCGCCCTGGGTGTGGCTCAGGGAATCTGCTATCTTCACCACGACTGTGATCCGGTCATTGTTCATCGTGATCTCAAACCTAGTAATATTTTATTAGATGGTGAAATGGAGGCCAGAGTGGCAGATTTTGGTGTGGCCAAGTTGATTCAGACCGACGAGTCCATGTCTGTCATTGCCGGTTCCTATGGATACATTGCACCAGAATATGCTTACACCCTTCAAGTCGATGAAAAGAGTGACATATACAGCTACGGAGTGGTGTTGATGGAGATCCTAAGCGGAAAACGTTCTGTGGATGCAGAATTTGGTGATGGGAACAGCATTGTTGATTGGGTGAGGTCAAAGATAAAGTCAAAAGATGGGATTGATGACATATTAGACAAGAATGCAGGAGCAGGGTGCAGGTCAGTGAGAGAAGAGATGATACAAATGCTTAGAATAGCATTGCTTTGCACGAGTAGAAACCCAGCGGATAGGCCTTCAATGAGGGATGTTGTGTTGATGCTGCAAGAGGCAAAGCCAAAGAGGAAATTGCTTCACAGTGTTGGCCGGGACAATGTGCTTGCCGCCGCCGCCGCCGTTGCTGATGACACTCCTTTGCCACAAAAGCCAACCGCGGATAACCCATGCTAA 3093 0.4989 MKPFLLFLTLFSFLSATATATATVTTLPFQLIALLSIKSSLLDPLNNLHDWDPTPATFSNSNPQHHPIWCSWRGITCHSKTSQIITLDLSHLNLSAASISPQIRHLSTLNHLNLSGNDFTGSFQYAIFELTELRTLDISHNSFNSTFPPGISKLKFLRHFNAYSNSFTGPLPQELSTLRFLEHLNLGGSYFSDGIPPSYGTLPRLNFLDLAGNALEGPLPSQLGHLAQLQHLEIGYNNFSGTLPSELALLSNLTYLDISNTNISGNVTPELGNLTKLETLLLFKNRLTGEIPSTIGKLKSLKGLDLSDNELTGPIPTQVTMLTELTMLNLMDNNLTGEIPHGIGDLPKLEILFLFNNSLTGTLPQQLGSNGLLLKLDVSTNLLQGLIPEYVCKGNKLVRLILFLNKFTGSLPPSLANCTSLARVRIQNNFLNGSIPQGLTLLPNLTFLDISSNNFEGQIPETFGANLQYFNISGNSFGTSLPASIWNATNLAIFSAASSNITGQIPDFIGCQALYRLELQGNSINGTIPWDIGHCQKLILLNLNRNSLTGIIPWEISTLPYITDVDLSHNSLTGTIPSNFNNCSTLENFNVSFNSLTGPIPSSGIFPNLHPSSYFGNQGLCGGVLAKPCAADAFSASDNQVDVRRQQPKRTAGAIVWIVAAAFGIGLFVLVAGTRCFHANYNRRFGDEVGPWKLTAFQRLNFTADDVLECLSMSDKILGMGSTGTVYRAEMPGGEIIAVKKLWGKQKENIIIRRRRGVLAEVEVLGNVRHRNIVRLLGCCSNKDSTMLLYEYMPNGNLDDLLHAKNKGDNLVADWFTRYNIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYAYTLQVDEKSDIYSYGVVLMEILSGKRSVDAEFGDGNSIVDWVRSKIKSKDGIDDILDKNAGAGCRSVREEMIQMLRIALLCTSRNPADRPSMRDVVLMLQEAKPKRKLLHSVGRDNVLAAAAAVADDTPLPQKPTADNPC 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0066 1030 SUPERFAMILY L domain-like 372 622 - -
Aed5g0066 1030 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 4 1010 - -
Aed5g0066 1030 Pfam Leucine Rich Repeat 537 558 IPR001611 GO:0005515
Aed5g0066 1030 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 4 1010 - -
Aed5g0066 1030 SUPERFAMILY RNI-like 87 438 - -
Aed5g0066 1030 SMART serkin_6 712 993 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0066 1030 Gene3D Ribonuclease Inhibitor 194 289 IPR032675 -
Aed5g0066 1030 SUPERFAMILY Protein kinase-like (PK-like) 715 989 IPR011009 -
Aed5g0066 1030 Gene3D Ribonuclease Inhibitor 466 509 IPR032675 -
Aed5g0066 1030 Gene3D Ribonuclease Inhibitor 393 465 IPR032675 -
Aed5g0066 1030 Pfam Leucine rich repeat 276 335 IPR001611 GO:0005515
Aed5g0066 1030 Pfam Protein kinase domain 715 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0066 1030 Gene3D Ribonuclease Inhibitor 510 631 IPR032675 -
Aed5g0066 1030 Gene3D Ribonuclease Inhibitor 290 392 IPR032675 -
Aed5g0066 1030 Gene3D Ribonuclease Inhibitor 30 193 IPR032675 -
Aed5g0066 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Aed5g0066 1030 Gene3D Transferase(Phosphotransferase) domain 1 793 1010 - -
Aed5g0066 1030 ProSitePatterns Protein kinases ATP-binding region signature. 718 741 IPR017441 GO:0005524
Aed5g0066 1030 Gene3D Phosphorylase Kinase; domain 1 696 792 - -
Aed5g0066 1030 Pfam Leucine rich repeat N-terminal domain 30 77 IPR013210 -
Aed5g0066 1030 ProSiteProfiles Protein kinase domain profile. 712 999 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0066 1030 SMART LRR_typ_2 442 466 IPR003591 -
Aed5g0066 1030 SMART LRR_typ_2 346 370 IPR003591 -
Aed5g0066 1030 SMART LRR_typ_2 322 345 IPR003591 -
Aed5g0066 1030 SMART LRR_typ_2 130 154 IPR003591 -
Aed5g0066 1030 SMART LRR_typ_2 202 226 IPR003591 -
Aed5g0066 1030 SMART LRR_typ_2 274 298 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0066 Aed-Chr5 483697 488437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0066 4 1005 Receptor kinase-like Gene Family AT1G08590 42.637 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Aed5g0066 Pkinase 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0066 - - gmx:100809695 1792.7