Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0061 ATGGACGCCGTCGATTCAACCCCAAACCCCCCTCCCCTCCCTCCCTACGATCCAGAGTATCATCAATCGGAAACCGGACAAAACGGTAACGGAAAACCATCGGAGAACGGCCAGGGCGCTGCCGACTATAACGGCTTGCATCCTCAGATTTCGAAGCCATTGCTCTCCGAAGGATTGACGCGGAGCGGCACCGACAGGGATCAATCCGGGGGCGAGGAGGAGACCACCAGCAAGCGGCGTCGCCGGAGCCGGTGGGACCCGCAGCCGGATTCCAATGAGCAGAGCGGCGGTGATTCCGGCACTGGACCGAAGAAGAGGAAGTCTCGTTGGGCCGATGACGAGCCGAAGCCGGTAATTCAGCTTCCTGATTTCATGGGTGGTATTGAATTCGATCCCGAGATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGAATGTTGCAGTCAGGTTTGCCCTTAGATGATCGTCCTGAAGGTGCTCGATCCCCTTCGCCTGAACCTATATATGATAACATGGGCATTAGGATTAACACTAGGGAGTATCGTGCGCGTGAGAGATTGCAAAAGGAGAGGCAGGAAATTATATCTCAGATTATTAAGAAAAACCCTGCATTTAAGCCACCCGCAGATTATAGGCCTCCCAAGCTTCAGAAGAAGCTTTATATACCTATGAAGGAATACCCTGGTTACAATTTTATTGGACTTATTATTGGTCCCAGAGGTAACACCCAGAAGCGGATGGAGAAAGAGACCGGTGCTAAAATTGTCATTCGTGGCAAAGGATCCGTTAAAGAGGGTAGGCTGCAGCAGAAGAGGGATTTGAAACCTGACCCTTCGGAGAATGAAGATTTGCATGTGTTAGTGGAGGCCGAGACGCCGGATTCTCTTGAGGCTGCTGCAGGTATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTCTTGAATGAGCATAAGAGGCAACAGCTTAGGGAGCTTGCTGCGTTGAATGGGACCATCAGGGATGAGGAGTATTGCAGGTTGTGTGGTGAGCCTGGTCATCGTCAATATGCGTGTCCTACTAGAACTTCAACCTTTAAGAGTGAAGTTGTGTGTAAGCACTGTGGGGATGGTGGTCATCCAAGCATAGATTGTCCAGTGAAGGGTGCTACTGGGAAGAAGATGGATGACGAGTATCAGAATTTCCTTGCAGAGTTGGGAGGTTCCGTTCCTGAATCTGCAACGAAGCAAACCAGTACATTGGCAATTGGTGCAGGCACTTCTGGAAGCAATCCTCCTTGGGCTAACAATTCTGGTATGGCTGGCGGTGCTCCTCAAGCTGGCTTAGGGGCTGCTGCTGTTAAAAAGGAAATTGATGATACGAATTTGTACATAGGGTACTTGCCGCCCACTCTTGATGATGATGGCCTGATCCAATTATTTCAACAATTTGGTGAGATTGTTATGGCGAAAGTTATCAAGGATCGAATGTCAGGTTTAAGTAAAGGATACGGTTTTGTGAAGTATGCTGATATCACAATGGCAAACAATGCAATCTTGGCCATGAATGGTTATCGCCTTGAGGGTCGAACCATTGCAGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTATTGTACCTCCTGGTCCTCCAGCCTCTGCTGTGCCCACTTATCCTGTACCAAGTCAGCCACTTGGTGCCTATCCATCCCAACAGTATGCTACCGGTGGCCCGCTTGGGACTGCTCCTGCTGGGAGTTACAGCAGTACTCCAGTGCCATGGGGACCCCCTGTTCCTCCTCCATATGCTTCCTATGCGCCTCCTCCACCTGGGTCAACTATGTATCCACCTATGCAAGGCCAACCTATGCCTCCTTATGGTGTTCAATATCCTCCTCCTGTGCCGACTGGCCCTCCCGGTGCCCCATCCCTGCCAGCAACTTCTAGTGAAGTTCAGCAGAGTTACCCTCCTGGAGTGCAGTCTGACAACAATACCTCAAATCAGTCTGTACCAACTAATGTATATGGTAATCTGGGACCTCCAATGCCACCTGCAGCTCACCCTACATATCCTGCATCTTATGGATATCCACCTTACTATAATGCAGTTCCTCCTCCACCTCCCCATTCTGCCCCCATGCCTGTCTCAACTTCAGACCAATCCCATAACATTGCAAATGTACCTTGGGCCACTAATTCTCTAGTTCCACCTCCTGCTTCATCGGCAGACAAGACAACATTTGGGACAAATCCACCGTTGCCTCCCCCTGCTTCATCAGCTGAGAAGACTTCATATGCTGCTGATTCAGAGTATGAGAAGTTCATGGCAGAGATGAAATGA 2316 0.5009 MDAVDSTPNPPPLPPYDPEYHQSETGQNGNGKPSENGQGAADYNGLHPQISKPLLSEGLTRSGTDRDQSGGEEETTSKRRRRSRWDPQPDSNEQSGGDSGTGPKKRKSRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPEPIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHVLVEAETPDSLEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGHRQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATKQTSTLAIGAGTSGSNPPWANNSGMAGGAPQAGLGAAAVKKEIDDTNLYIGYLPPTLDDDGLIQLFQQFGEIVMAKVIKDRMSGLSKGYGFVKYADITMANNAILAMNGYRLEGRTIAVRVAGKPPQPIVPPGPPASAVPTYPVPSQPLGAYPSQQYATGGPLGTAPAGSYSSTPVPWGPPVPPPYASYAPPPPGSTMYPPMQGQPMPPYGVQYPPPVPTGPPGAPSLPATSSEVQQSYPPGVQSDNNTSNQSVPTNVYGNLGPPMPPAAHPTYPASYGYPPYYNAVPPPPPHSAPMPVSTSDQSHNIANVPWATNSLVPPPASSADKTTFGTNPPLPPPASSAEKTSYAADSEYEKFMAEMK 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0061 771 CDD SF1_like-KH 218 334 - -
Aed5g0061 771 MobiDBLite consensus disorder prediction 724 758 - -
Aed5g0061 771 MobiDBLite consensus disorder prediction 100 116 - -
Aed5g0061 771 MobiDBLite consensus disorder prediction 262 283 - -
Aed5g0061 771 SUPERFAMILY RNA-binding domain, RBD 450 542 IPR035979 GO:0003676
Aed5g0061 771 ProSiteProfiles Type-1 KH domain profile. 232 304 - -
Aed5g0061 771 Gene3D - 430 536 IPR012677 -
Aed5g0061 771 SMART kh_6 217 309 IPR004087 GO:0003676
Aed5g0061 771 SMART c2hcfinal6 364 380 IPR001878 GO:0003676|GO:0008270
Aed5g0061 771 SMART c2hcfinal6 338 354 IPR001878 GO:0003676|GO:0008270
Aed5g0061 771 ProSiteProfiles Zinc finger CCHC-type profile. 339 353 IPR001878 GO:0003676|GO:0008270
Aed5g0061 771 MobiDBLite consensus disorder prediction 153 172 - -
Aed5g0061 771 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 35 771 - -
Aed5g0061 771 MobiDBLite consensus disorder prediction 66 88 - -
Aed5g0061 771 MobiDBLite consensus disorder prediction 605 634 - -
Aed5g0061 771 ProSiteProfiles Zinc finger CCHC-type profile. 365 379 IPR001878 GO:0003676|GO:0008270
Aed5g0061 771 MobiDBLite consensus disorder prediction 724 740 - -
Aed5g0061 771 Pfam KH domain 232 304 IPR004088 GO:0003723
Aed5g0061 771 MobiDBLite consensus disorder prediction 1 119 - -
Aed5g0061 771 Gene3D - 131 208 - -
Aed5g0061 771 SUPERFAMILY Retrovirus zinc finger-like domains 335 381 IPR036875 GO:0003676|GO:0008270
Aed5g0061 771 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 456 525 IPR000504 GO:0003723
Aed5g0061 771 MobiDBLite consensus disorder prediction 635 667 - -
Aed5g0061 771 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 454 532 IPR000504 GO:0003723
Aed5g0061 771 SMART rrm1_1 455 528 IPR000504 GO:0003723
Aed5g0061 771 Gene3D K Homology domain, type 1 209 337 IPR036612 GO:0003723
Aed5g0061 771 Pfam Splicing factor 1 helix-hairpin domain 106 213 IPR032570 -
Aed5g0061 771 Gene3D - 338 390 - -
Aed5g0061 771 PANTHER RNA-BINDING PROTEIN RELATED 35 771 IPR045071 -
Aed5g0061 771 MobiDBLite consensus disorder prediction 21 37 - -
Aed5g0061 771 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 217 343 IPR036612 GO:0003723
Aed5g0061 771 MobiDBLite consensus disorder prediction 605 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0061 Aed-Chr5 443870 446185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0061 454 661 Eukaryotic Initiation Factors Gene Family AT3G16380 26.728 3.81e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0061 K13095 - gmx:100800982 1249.19