Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0054 ATGGACTTGAAGTCGAATCATACTCCTGTCCTCACTGATACTGCACCTGTAACAAAGTCTAGACTGGGTGTGCATTCCAGTTTGTTGCCTTATTCTCATACTGGAACAACCTTTACACATGGAATGTTATTGACTATCCCGAGGAAGAAGACAGGACTTCTTGAAGATGTTCGTTGTAGTGGTTGGTTGGATGCCATGAAATCATCTTCACCTCCAGCCAGGAAGATAACAAGGGATGTTAGCCATGGGTTTGGATCATCTGATTCTGATACTGCTGGTGCTTATTTTAGCTGGCTGCTAAAATACCCATCGGCACTTACATCTTTTGATCAAATCACGAACTATGCAAAAGGGAAAAGAATTGCATTGTTTATGGATTATGATGGAACTCTTTCACCAATTGTGGATAATCCTGAACGTGCTTTCATGTCTGACAATATGCGTGCTGCTGTTAAAAAGGTGGCAGAATATTTTCCAACAGCGATAATTAGTGGAAGAAGTCGTGACAAGGTATATCAATTTGTAGGACTAACAGAACTCTATTACGCTGGTAGTCATGGAATGGACATCATTGGCCCTGTTAGACAATCTCTATCTGATAATCACCCAAATTGCATTAGGTCTACAGACAAGCAGGGTAAGGAAGTAAATTTATTCCAACCTGCTGCTAAATTTCTGCCCATGATTATTGAGGTACTTAAGTCTCTTGAGGAGTGTACGAAAGACATCAAAGGAGCTACAGTTGAGAACAATAAATTTTGTGTATCTGTGCACTACCGGAATGTAGATGAAAAGTATTGGGATTTGGTGGGGCAACGTGTTCATGATGTTCTGAAGGGCTATCCGCGTTTGCGCTTAACTCATGGGCGGAAGGTTTTAGAGATCCGACCTGTGATTAACTGGGATAAGGGAAAAGCTGTCACGTTCTTACTTGAGTCACTTGGACTAAACAATTGCGATGACGTGCTTCCTATATATATTGGAGATGATCGGACAGACGAGGATGCATTTAAGGTTCTGAGAGAGGGAAATAAGGGTTATGGGATCTTGGTGTCTTCCACACCCAAAGAAAGCAATGCAGATTACTCTCTTCGTGATCCATCAGAAGTGATGGAATTTCTGAAGTCACTTTTGTTATGGAAATCAAGCACCTTGAAAAGTCTTATATAG 1170 0.412 MDLKSNHTPVLTDTAPVTKSRLGVHSSLLPYSHTGTTFTHGMLLTIPRKKTGLLEDVRCSGWLDAMKSSSPPARKITRDVSHGFGSSDSDTAGAYFSWLLKYPSALTSFDQITNYAKGKRIALFMDYDGTLSPIVDNPERAFMSDNMRAAVKKVAEYFPTAIISGRSRDKVYQFVGLTELYYAGSHGMDIIGPVRQSLSDNHPNCIRSTDKQGKEVNLFQPAAKFLPMIIEVLKSLEECTKDIKGATVENNKFCVSVHYRNVDEKYWDLVGQRVHDVLKGYPRLRLTHGRKVLEIRPVINWDKGKAVTFLLESLGLNNCDDVLPIYIGDDRTDEDAFKVLREGNKGYGILVSSTPKESNADYSLRDPSEVMEFLKSLLLWKSSTLKSLI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0054 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 IPR044651 GO:0004805|GO:0005992
Aed5g0054 389 Gene3D - 121 211 IPR023214 -
Aed5g0054 389 Gene3D - 220 387 IPR023214 -
Aed5g0054 389 TIGRFAM T6PP: trehalose-phosphatase 118 378 IPR003337 GO:0003824|GO:0005992
Aed5g0054 389 Pfam Trehalose-phosphatase 124 368 IPR003337 GO:0003824|GO:0005992
Aed5g0054 389 SUPERFAMILY HAD-like 122 380 IPR036412 -
Aed5g0054 389 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 384 - -
Aed5g0054 389 CDD HAD_TPP 122 372 - -
Aed5g0054 389 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 123 341 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0054 Aed-Chr5 409608 416254 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0054 115 377 Trehalose Biosynthesis Gene Families AT1G70290 26.071 2.97e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0054 K01087 - gmx:100775207 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed5g0054 5 409608 416254 Aed5g0054 5 409608 416254 ECH