Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0052 ATGGCTCGCGGAAAGGTTCAGCTGAAGCGAATTGAGAACCCTGTGCACAGGCAAGTTACCTTCTGCAAGCGCCGTGCTGGGCTTCTTAAGAAGGCTAAAGAACTCTCTGTGCTGTGCGATGCTGAAATTGCCCTTTTCATTTTCTCTGCCCATGGAAAGCTCTATGAACTAGCCACCAAAGGAACCATGCAAGGGCTCATTGAGAGGTACATGAAGTTCACACGAGGGGCTCATCAGCCTGAAGCACCACCACCTGAATCACTTCTTCTTCTGGATGCAAAAGAGGAAACTAACGTGCTAAAAGAAGAAATCCAAACATTGCAAAATGGTATCAGGTATTTGTTTGGAGGAGGAAATAAGACTACGACAATTGATGAATTACAAGTAATGGAGAAGAATCTCGAAACTTGGATATATCATATTCGTTCAATGAAGATGAACATCATGTTACAAGAAATTCAAGCTTTGAAAGATAAGGAGGGAACACTTAAAGCGGCAAATGAATATCTCCATGACAAGATTGTGGAGAATACTGCATTTTCTAACTTTGTTCAATTTGCTACTGATACTTCGTACCCATTAATTATACAAGATGGGGGTTTTCAACTCTATTAA 615 0.4114 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIALFIFSAHGKLYELATKGTMQGLIERYMKFTRGAHQPEAPPPESLLLLDAKEETNVLKEEIQTLQNGIRYLFGGGNKTTTIDELQVMEKNLETWIYHIRSMKMNIMLQEIQALKDKEGTLKAANEYLHDKIVENTAFSNFVQFATDTSYPLIIQDGGFQLY 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0052 204 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Aed5g0052 204 Pfam K-box region 94 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed5g0052 204 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Aed5g0052 204 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aed5g0052 204 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aed5g0052 204 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Aed5g0052 204 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aed5g0052 204 Coils Coil 90 110 - -
Aed5g0052 204 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 1 202 - -
Aed5g0052 204 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 202 - -
Aed5g0052 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Aed5g0052 204 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aed5g0052 204 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aed5g0052 204 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0052 Aed-Chr5 399380 401940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0052 1 203 MADS-box Gene Family AT1G71692 58.140 4.15e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aed5g0052 K-box 5.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0052 - - gmx:100815314 349.362