Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0046 ATGATATTAATGATGAGAAAAACATTGTTATTACTGTCCTTTGTTTTCTCAATAGCAGCCTCATCAAGAACAAGACATTCCAACAACAGCAACATAGATTGGTGGTGCAACCAAAGCCCATACCCGGAGCCATGCAAATACTACATGAAAAACAGCCACTACAAGCAGTTCAAACACAAATCCGAGTTCCGCACAATTCTGGTTCACTTGGCCTTGGAGAGAGCAGTGATCATGCAAAGGAAAGCACGCGAGTTGGGGCAAAATTACAGGATCACAAAGAAGCAGAAATCAGTGTTCCGTGATTGTTTGAAGCTCTATGACAACACCGTTTTCCATCTAAACCGTACCCTTCAGGGCCTTCACGTGAAGAGAAGCTGTTCACCCTTTGATGCACAAACGTGGCTCAGCACGGCTCGCACAAACATTGAGACATGTCAAAACGGGGCCTTAGAACTTGGCATTCGAGATTCCATGGTTCCCACTGAGAGATGCAACGTGACTGAGATTATAAGCAATGGGTTATTCGTGAATTGGGGTTTCCTAAAGTACGAAGCGGATGATTATACGGATGATTCATTTCCAAGGTGGTTTTCGGTGGATGAGAGGAAGCTGTTGCAGTCACAGTCTTCTTCAAGGGCACATCTTGTTGTGGCCAAAGATGGTTCTGGGCATTTCAAGAGTGTCCAAGCAGCTATAAATGCCGCGGCAAGGAGAAGGTTGAAGAGCAGGTTCATAATACATGTCAAGAGAGGAGTTTATAGAGAGAACATTGAAGTTGACAAGACCAATGATAATGTAATGTTGGTAGGCGATGGCATGAGAAATACCATAATAACAAGTTCAAGAAGCGTTAAAGGCGGCTATACCACCTATAGCTCCGCAACAGCAGGAATTGATGGTCTTCACTTCATTGCACGTGACATTACCTTCAGAAACACGGCGGGTCCTCTGAAGGGTCAAGCGGTGGCACTTCGATCAGCCTCTGACCTATCCGTGTTCTATCGCTGTGCCATCGAAGGCTACCAAGACACCCTCATGGTCCATGCACAACGACAATTTTACAGAGCTTGTTACATCTATGGCACCGTTGACTTCATATTTGGCAACGCTGCTGCTGTTTTTCAAAACTGTGTCATTCTTGTGAGAAAGCCTTTAAATGGACAAGCAAACATGATAACTGCCCAAGGTCGAGATGACCCATTTCAAAACACAGGCTTTTCAATCCACAATTCACAGATCAGGGCTGCACCAGACCTCAGGCCTTTCTCTGGCAAGTTCAACACCTTCTTGGGCCGCCCTTGGCAACGATACTCAAGAGTTGTGGTCATGAAATCATTCTTGGATAGCTTTCTGAGCCCAATGGGTTGGTCTCCGTGGGGGAACACTAATTTTGCTCTGAATACTCTCTACTATGGAGAGTACAGAAACTTTGGGCCCGGTTCATCCACGAGAAACAGGGTACCATGGCCTGGTTTTCATAGAATTACAAGCCCAGCTGAGGCATCTCGATTCACCGTTGCTAACCTCCTTGCTGGTCGCACATGGTTGCCTGCTACTGGCGTGCCATTCACTTCTGGCCTTTGA 1584 0.4609 MILMMRKTLLLLSFVFSIAASSRTRHSNNSNIDWWCNQSPYPEPCKYYMKNSHYKQFKHKSEFRTILVHLALERAVIMQRKARELGQNYRITKKQKSVFRDCLKLYDNTVFHLNRTLQGLHVKRSCSPFDAQTWLSTARTNIETCQNGALELGIRDSMVPTERCNVTEIISNGLFVNWGFLKYEADDYTDDSFPRWFSVDERKLLQSQSSSRAHLVVAKDGSGHFKSVQAAINAAARRRLKSRFIIHVKRGVYRENIEVDKTNDNVMLVGDGMRNTIITSSRSVKGGYTTYSSATAGIDGLHFIARDITFRNTAGPLKGQAVALRSASDLSVFYRCAIEGYQDTLMVHAQRQFYRACYIYGTVDFIFGNAAAVFQNCVILVRKPLNGQANMITAQGRDDPFQNTGFSIHNSQIRAAPDLRPFSGKFNTFLGRPWQRYSRVVVMKSFLDSFLSPMGWSPWGNTNFALNTLYYGEYRNFGPGSSTRNRVPWPGFHRITSPAEASRFTVANLLAGRTWLPATGVPFTSGL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0046 527 ProSitePatterns Pectinesterase signature 2. 359 368 IPR033131 -
Aed5g0046 527 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
Aed5g0046 527 Pfam Plant invertase/pectin methylesterase inhibitor 31 174 IPR006501 GO:0004857
Aed5g0046 527 Gene3D - 208 527 IPR012334 -
Aed5g0046 527 Pfam Pectinesterase 215 512 IPR000070 GO:0030599|GO:0042545
Aed5g0046 527 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 178 IPR035513 -
Aed5g0046 527 CDD PMEI-like_3 34 177 - -
Aed5g0046 527 PANTHER PECTINESTERASE 8 526 - -
Aed5g0046 527 PANTHER PECTINESTERASE 8 526 - -
Aed5g0046 527 SUPERFAMILY Pectin lyase-like 210 526 IPR011050 -
Aed5g0046 527 SMART PMEI_2 27 176 IPR006501 GO:0004857
Aed5g0046 527 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0046 Aed-Chr5 368817 370400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0046 28 527 Carbohydrate Esterase AT5G51500 59.921 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0046 K01051 - gmx:100807908 958.747