Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0038 ATGGTCGTCAACGAGAGACCCGCAAAGAGGATGAAGAGGAGGGTTACTGCTGATCTCTGTGATTTTCTTACTTTTCCAGCGCCCGCTATCCCTGCCTCCGCCGAACCCTTCCGTAACTCTGTCCAGCGCTTCCTCTCTGACCATGCGCGAATCACTTTTCCTCCCTCCCTCTTTCCGTCACTGATGACGTGGCAGATCTTGTTTCGTGTTGGAGACCTCCTTGACGAACCCGATCTCTCCCCGCCGATGGTCACTCTCGACATTGTCGAAGAGGACGTCACTCGTTCTCGCACTTCCCTCTATTGTGACCAGTGCCGAGTCGTTGGGTGGAGTGGGCATCCGGTGTGTCGAAAGCGATACCATTTCATAATAAGGGCTGCGAGTGATGCCGTCGAAGCATATCAAAGACCTTGTTCAAGATGTGGAAATCTTCTCCAATTATCTGAAACAAGGTGTAGATCGTGTAACTTTGCCATCACAGTTGATGACCTTGAGGATTGGGTGTATCTTCAGATTGAAGATAATACCCATCTTCTGCATGGTGTCGTCCATGCCAATGGTTATGGTCACCTGCTTACTCTTAGTGGAAGAGAAGGTGGCTCAAAGCTTCTCTCTGGATCTGATATCATGAATTTCTGGGATAGGCTATGTGCTGCAATTTCTGTTAGGAAGGTTAGCGTGATGGATTTGTCCAAGAAATTTGGGCTGGAATACCGATTGCTTCATGCAATCACCGATGGACATTCCTGGTATGGTAATTGGGGTTATGAATTTGGAACTGGCAGCTATGCTCTTACCCAAGATGCGTACAAGAATGCAGTGAATACCTTGTCAAGTATGCCCTTGTCTTCATTTTCATTCCATGGTCGCGGACTAAGAAGCCGCCTGGAGTGTGTCATTTCTCTTTACAAGTCCTTAGCAGAAACTGAACTTTTTACAATTAAAGATCTCTTCTCCTTTTTGTTGAGATTGATTAATGATTGTCGTAAGCCAGTGGCCATGAGGACGTCTGTGCAGACCAGTAATTTATTGTGTGCTTGGACGGGGAATGATGTTGAAGAGGTGCAAAATGCTTTGATGAAGGTATTGCTTGCAACGGGTGTCTGTACTGAGTCCAAATGGGTGGCAAGGCGTGCTCTCAAGGGTGCAGTATGCAGGGGTGTTTCATCTCCAGAGCTTCTAGACTACTGTCTTAAGCACTTGCCAGGGAAATTAGCTGCCAATGGAATGATAGTTGGTTCACGATGCAATCCCATTTCCAGTGCCATTGAATTCAGGTTAGAACCTTGGTGTAATGGATTAAGCACAAATTCAAGCTATCCACCAGAAGTTCAACTGATCTCTGATTTGACATTTTTATTTGATTCAGTTATTCACCCTGACAAAATGGTGTGCTACAGACCTAAGATTATGAGGAAAAGGGTCGCTGATTCAGCCAGGAAGCTCCTTGACTGTAAACAGTTTATGAAGGATTACAAGCCTTGTGAAATGGTCATTGAATTGCCTTCAGTCATTAGGCTGTGGTGTCATGTGGAGCTTTCTGATCAGCCTAAGGATGATCCATCCCCACCGCCAGAGCTGATTTTGCTGCCTTTGAATGCTACCGTTGCTGACCTCAAGTGTGAAGCCACTAGTGCTTTTCAAGAGGTGTATGCAATGTATAAGAGGTTTCAAGCTGAGGAACTCTTAGGATACGGACCAATCGGTGATTCACTCACCATAAAGTTCTTGCTTGGAACAAATGGATCAATCCTAATTCAAGGTAAATGTCCAGCCAAACATGGGCTAAGTCGATTCCGAATGGAACGAGGAACAGAGGCTTGGAAGGTGGATTGCACTTGTGGGGCTAAGGATGATGATGGAGAGAAAATGTTAGCATGTGATACCTGTGGCGTTTGGCAGCATACGAGGTGTGCTGGAATTGATAATACTGACGGAATGCCTTCTAAGTTTGTTTGTATGAGATGTGTCGACTCGTACCGTGAGGAAACTAAAAAATTACCAGCACCTGGTGAGGAAGCTAACGAAACCTGTAAATTCAACACATCTTGCAGGGATGAGGTAACAGTTTCATGTAACATGGCTGTGAATTTTGGTGTACGTTGA 2106 0.4554 MVVNERPAKRMKRRVTADLCDFLTFPAPAIPASAEPFRNSVQRFLSDHARITFPPSLFPSLMTWQILFRVGDLLDEPDLSPPMVTLDIVEEDVTRSRTSLYCDQCRVVGWSGHPVCRKRYHFIIRAASDAVEAYQRPCSRCGNLLQLSETRCRSCNFAITVDDLEDWVYLQIEDNTHLLHGVVHANGYGHLLTLSGREGGSKLLSGSDIMNFWDRLCAAISVRKVSVMDLSKKFGLEYRLLHAITDGHSWYGNWGYEFGTGSYALTQDAYKNAVNTLSSMPLSSFSFHGRGLRSRLECVISLYKSLAETELFTIKDLFSFLLRLINDCRKPVAMRTSVQTSNLLCAWTGNDVEEVQNALMKVLLATGVCTESKWVARRALKGAVCRGVSSPELLDYCLKHLPGKLAANGMIVGSRCNPISSAIEFRLEPWCNGLSTNSSYPPEVQLISDLTFLFDSVIHPDKMVCYRPKIMRKRVADSARKLLDCKQFMKDYKPCEMVIELPSVIRLWCHVELSDQPKDDPSPPPELILLPLNATVADLKCEATSAFQEVYAMYKRFQAEELLGYGPIGDSLTIKFLLGTNGSILIQGKCPAKHGLSRFRMERGTEAWKVDCTCGAKDDDGEKMLACDTCGVWQHTRCAGIDNTDGMPSKFVCMRCVDSYREETKKLPAPGEEANETCKFNTSCRDEVTVSCNMAVNFGVR 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0038 701 ProSitePatterns Uncharacterized protein family UPF0054 signature. 180 190 IPR020549 -
Aed5g0038 701 Pfam PHD-finger 612 657 IPR019787 -
Aed5g0038 701 ProSitePatterns Zinc finger PHD-type signature. 612 656 IPR019786 -
Aed5g0038 701 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 679 - -
Aed5g0038 701 SMART PHD_3 611 657 IPR001965 -
Aed5g0038 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 662 IPR013083 -
Aed5g0038 701 SUPERFAMILY FYVE/PHD zinc finger 601 658 IPR011011 -
Aed5g0038 701 CDD PHD_MMD1_like 611 656 - -
Aed5g0038 701 PANTHER PHD FINGER PLANT-LIKE PROTEIN 1 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0038 Aed-Chr5 312883 316875 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0038 7 656 PHD Transcription Factor Family AT5G22260 26.308 5.85e-84 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aed5g0038 PHD 3.9e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0038 - - gmx:100780558 1294.26