Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0035 ATGTGCATCATCAGTGACGGGAGAAGCAGGAGCAGGAAGCGCGAATCTGCATTCCGCGGAGTGCGCAAACGCAGCTGGGGACGCTACGTTTCAGAGATAAGGCTCCCTGGCAAGAAAACCCGGATATGGCTGGGCTCCTTCGGCTCGGCTGAGATGGCGGCTCGGGCATATGACTCAGCGGCTTTCTTCCTTAAAGGAACCTCTGCCACCCTTAATTTCCCCGACCTCGTACACTCCCTGCCTCGCCCTCTCTCCTCTTCCCGGAGAGACATTCAATCCGCCGCCGCTAAAGCCGCTCTCCACTCCTCCCCGCCCCCCATAACCAAAACGGATCAGTGGTTGGGAGAAGAAGAAACCATCCCTTTCACGATGTCGTTTCAGGAGGATGTCAAGGAAGCTCCTCTTATGAGCCCCCTTAGGATGGACTCCACTTTCGGAGATTTTTCTTGGAACCAACTCTTGGATGACAACATTTTCATCATGGATTCAACTTCCACACTTGTGTAG 507 0.5424 MCIISDGRSRSRKRESAFRGVRKRSWGRYVSEIRLPGKKTRIWLGSFGSAEMAARAYDSAAFFLKGTSATLNFPDLVHSLPRPLSSSRRDIQSAAAKAALHSSPPPITKTDQWLGEEETIPFTMSFQEDVKEAPLMSPLRMDSTFGDFSWNQLLDDNIFIMDSTSTLV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0035 168 Pfam AP2 domain 17 66 IPR001471 GO:0003700|GO:0006355
Aed5g0035 168 Gene3D AP2/ERF domain 17 75 IPR036955 GO:0003700|GO:0006355
Aed5g0035 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF036-LIKE 10 117 - -
Aed5g0035 168 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Aed5g0035 168 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Aed5g0035 168 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Aed5g0035 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 117 - -
Aed5g0035 168 CDD AP2 16 76 IPR001471 GO:0003700|GO:0006355
Aed5g0035 168 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Aed5g0035 168 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Aed5g0035 168 PIRSF PTI6 122 167 IPR017392 GO:0003700
Aed5g0035 168 PIRSF PTI6 96 131 IPR017392 GO:0003700
Aed5g0035 168 PIRSF PTI6 4 99 IPR017392 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0035 Aed-Chr5 300192 300698 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0035 5 100 AP2-EREBP Transcription Factor Family AT4G32800 59.375 1.36e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aed5g0035 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0035 K09286 - gmx:100783790 217.238