Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0033 ATGAGACCAATTTTGATGAAAGGTCACGAGAGGCCGCTGACGTTTCTGAAATACAACAGAGACGGCGATCTCCTCTTCTCCTGCGCCAAGGATCACAACCCTACGGTCTGGTTTGCCGACAACGGAGAACGCTTGGGAACTTATAGGGGCCACAACGGCGCCGTTTGGTCCTGCGACGTCTCAAGAGATTCTAGTAGACTCATAACGGGAAGTGCAGACCAGAGCGCGAAGCTATGGGACGTGGAAAGTGGTGAACAAGTCTTCACTTTCAATTTTGATTCCCCTGCCAGGTCCGTCGATTTTTCCGTTGGTGATAAGCTCGCCGTTATCACCACTGATCCCTTTATGGAATTGCCCTCCGCTATCCATGTCAAACGCATTGCTCATTCTAATGATCCTACCCAACAGACCTCTGAATCTGTTCTTCTCATTAAGGGTCCTCAGGGAAGGATTAACAGAGCTATTTGGGGACCCCTCAACACAACCATTATTAGTGCTGGGGAAGACGCTGTTATTCGTATTTGGGATTCTGAGACCGGAAAACTTCTTAATGAGTCCGACAAGGAATGTGGCCATAAAAAGACTGTAACATCACTTGCTAAGTCTGCTGATGGTTCACATTTCCTTACTGGCTCCCTTGATAAGTCCGCTAGGCTTTGGGATAGCAGGTCATTGACTCTTATCAAGACATATGTCACAGAACGCCCAGTCAACGCAGTTGCAATGTCACCTCTTCTTGATCATGTGGTAATTGGAGGTGGTCAGGATGCGTCATCTGTTACAACTACTGATCATCGTGCTGGCAAATTTGAAGCCAAATTCTTTGATAAGATTCTTCAAGAAGAAATTGGGGGTGTGAAAGGCCATTTTGGACCAATTAATGCATTGGCTTTCAACCCTGATGGAAGAAGTTTTTCAAGTGGAGGTGAAGATGGTTATGTACGGTTGCACCACTTCGACCCAGATTATTTCAACACCAAAATATAG 987 0.462 MRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWSCDVSRDSSRLITGSADQSAKLWDVESGEQVFTFNFDSPARSVDFSVGDKLAVITTDPFMELPSAIHVKRIAHSNDPTQQTSESVLLIKGPQGRINRAIWGPLNTTIISAGEDAVIRIWDSETGKLLNESDKECGHKKTVTSLAKSADGSHFLTGSLDKSARLWDSRSLTLIKTYVTERPVNAVAMSPLLDHVVIGGGQDASSVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGRSFSSGGEDGYVRLHHFDPDYFNTKI 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0033 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Aed5g0033 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 230 IPR001680 GO:0005515
Aed5g0033 328 Pfam WD domain, G-beta repeat 43 80 IPR001680 GO:0005515
Aed5g0033 328 Pfam WD domain, G-beta repeat 191 221 IPR001680 GO:0005515
Aed5g0033 328 Pfam WD domain, G-beta repeat 285 316 IPR001680 GO:0005515
Aed5g0033 328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 181 - -
Aed5g0033 328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 286 316 - -
Aed5g0033 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Aed5g0033 328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 224 - -
Aed5g0033 328 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 328 - -
Aed5g0033 328 SMART WD40_4 1 38 IPR001680 GO:0005515
Aed5g0033 328 SMART WD40_4 279 318 IPR001680 GO:0005515
Aed5g0033 328 SMART WD40_4 179 221 IPR001680 GO:0005515
Aed5g0033 328 SMART WD40_4 137 176 IPR001680 GO:0005515
Aed5g0033 328 SMART WD40_4 224 264 IPR001680 GO:0005515
Aed5g0033 328 SMART WD40_4 41 80 IPR001680 GO:0005515
Aed5g0033 328 ProSitePatterns Trp-Asp (WD) repeats signature. 67 81 IPR019775 -
Aed5g0033 328 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Aed5g0033 328 PRINTS G protein beta WD-40 repeat signature 67 81 IPR020472 -
Aed5g0033 328 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Aed5g0033 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 48 89 IPR001680 GO:0005515
Aed5g0033 328 ProSitePatterns Trp-Asp (WD) repeats signature. 163 177 IPR019775 -
Aed5g0033 328 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 48 85 - -
Aed5g0033 328 CDD WD40 7 316 - -
Aed5g0033 328 Gene3D - 1 328 IPR015943 GO:0005515
Aed5g0033 328 SUPERFAMILY WD40 repeat-like 4 316 IPR036322 GO:0005515
Aed5g0033 328 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 328 IPR027525 GO:0003743|GO:0005737|GO:0005852
Aed5g0033 328 ProSiteProfiles Trp-Asp (WD) repeats profile. 286 316 IPR001680 GO:0005515
Aed5g0033 328 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0033 Aed-Chr5 289338 291455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0033 1 328 Eukaryotic Initiation Factors Gene Family AT2G46290 78.788 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0033 K03246 - gmx:100819486 630.172