Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0031 ATGACTCCAGTTAATTTGGCAGGCCAGTTTGGTGACACAACATACACTAAGGTGTTTGTTGGAGGGTTGGCCTGGGAGACTCAAAAGGAGACAATGAAGAAGTATTTTGAGCAATTTGGTGAGATCTTGGAGGCTGTTGTCATCACTGACAAAGCCACTGGAAGATCTAAAGGCTATGGATTTGTAACATTTCGTGAACCAGAAGCTGCCATGAGAGCTTGTGTGGATGCGGCTCCTGTAATCGACGGTAGGAGAGCTAACTGCAACCTTGCTTCTTTGGGTGTCCAGAGATCTAAGCCTTCAACCCCAAAGCACGGAGGAGCAGGGAGGAACTTTAGATCAGTAATGGGTTCTTTCCAGACAGGATTTGGAGCTGGTGGAGTGGGATCGGCTTTTCCTTCAGCACCAACCTTCCCTCATTATGCCATTCAGCAAGGGATACCTTATAATGTTTATGGGTACTCTCCTTACTCGCCGGATTACACTTACCCTACGAGCTACTATGGTGTGTATGGAGGAGCTGCAACTGCACAGTACCCAGTTTATGGAAGTGGACCTGCAGGAGGGATGATGACCACCGGTGCTGCTGCAGCGTTCTATCCATATCTGCAGTACGGAGGAGAAGGGAATGGCGGCGGAGCCACAACCGGCGGCTATAATTCCGGGCAGGGTGGTTATGGTACTGTCAACTACCCTCATCATCAGCTCTTTCAGTATTCTCCCATTGCTTCCACTGCAGGTGCCTATGCCCAGCACTATGGAACACCTATGTCTCTTGCTCCTTCCCCTGCCTTGCAATCAGGCGTGACCATGGCTCTCCAAGCTCCAATTCCTCATCGCTAG 843 0.5006 MTPVNLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPKHGGAGRNFRSVMGSFQTGFGAGGVGSAFPSAPTFPHYAIQQGIPYNVYGYSPYSPDYTYPTSYYGVYGGAATAQYPVYGSGPAGGMMTTGAAAAFYPYLQYGGEGNGGGATTGGYNSGQGGYGTVNYPHHQLFQYSPIASTAGAYAQHYGTPMSLAPSPALQSGVTMALQAPIPHR 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0031 280 SUPERFAMILY RNA-binding domain, RBD 12 114 IPR035979 GO:0003676
Aed5g0031 280 PANTHER OS01G0876800 PROTEIN 1 275 - -
Aed5g0031 280 PANTHER BOULE-RELATED 1 275 IPR037366 GO:0003729
Aed5g0031 280 SMART rrm1_1 17 89 IPR000504 GO:0003723
Aed5g0031 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 73 IPR000504 GO:0003723
Aed5g0031 280 Gene3D - 7 112 IPR012677 -
Aed5g0031 280 CDD RRM_RBM24_RBM38_like 16 91 - -
Aed5g0031 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0031 Aed-Chr5 279339 284371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0031 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 5.41e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0031 - - adu:107477578 450.284