Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0030 ATGGATTGCTCATTCAATGCCAATACGTGTGAGATGGTAGAAACAAGTGAAGAAGAGTTGAAAATAGATGAAAATCCTGAGAGTAGTTGTGCCCAAAAATCAGGAAAAAGGTATTCTATAGAGGATGATATCAATCGTCTTTTGCAAGCTATTGATATTAAAAATACAGCTAGAGCTCCAGGTTCACAGAAGAGTGCTCTTAAAAAACCCATAATAGTCACTTCGGAACCTGTAAGTTTGAAGCAGGCATTAAGAGGATTGTGCATCTCACAGGCATCAGAAATGGCTGCATTGAAGCGAATGTCAAAGCTATCCACTTCGTCAAGAGTATCTACTAATGAATTGGGAAGCAATGAGATATCAAATTCAAGTGCTCATCATTCTACTCCAACAATCCCAACCAGATCATCATACCGAAACCAAATTGTCCCTATTGAAAATCAGGTACTAGCAGATTCCTCCAGAAAAGATTATCTCGGTTCTTCAATGCCAGATAAGGAGGCAATGGAAGCAAACTTAAATTCTCCACCTAGTTCTGGCAGAGGTAATGGGGTGGATAAACCCACAAGTAGTAATACATCTTTTGCAAAGCCAATATTTAAGGACAAGAACTTTCTTAAGAAGAAAGTGAAGCAAAATTTATATTCTTCGTCGTCGAGCTGCTCCAATCCATTTACCAGAAACATTGGCAATGATTTGGCTTCCAGTACAAGTGATTTGAACAGAGTGACTGACAATTCTGATTCAAAGAATGAAATGAAAGAAAACAAGAAGCTGTCTTTCAGACATTCAAACTCAAACTCAGTTAATGCTGGCAAAAGGAGGAGTAGGTTTCTAGTGACAAAATATGATGAGAAATCAAGATCAAAAGATAAGAGTGAACTCTCACAATCACAAAGTCCAAAAAGTAGCACTGGGGATTATTGTAGTATGAGTGAGGAAAGCAATCTAATTAGTGGTCCCAGTTGCAGGCCTCACATGTCAAAGCACGCAAGATGGGAAGCAATTCGCCTTATTGAGGAGCAGCAGCAGCAGCATGGTAATTTAAGTTGGAGGAACTTCAAGATGCTCAAGAGGCTTGGTCGTGGGGACATTGGAACTGTTTATCTAGCCCAACTAATTGGTACGAGTAGCCTTTTTGCACTAAAAGTTGTGGAGAATGACTTTTTGGTAAACCAGAAGAAGAAAATGTCGAGGGCCCGAACTGAAAGAGAGATATTGCAGATGCTGGATCATCCGTTTCTTCCTACACTTTATGCCCATTTTGAAACGGATAAGCTCTCTTGCTTGGTTATGGAGTATTGTCCCGGTGGAGATCTGCATGTGCTGCGCCAGAGGCAACCATCTAAGAGTTTCTCAGAACACACAACCAGGTTTTATGTTGCTGAAGTTCTCCTTGCGCTGGAGTATTTGCACATGCTAGGAGTTGTATATAGAGACCTGAAGCCAGAAAATATCCTGCTAAGAGAAGATGGCCACATTATGCTTACGGATTATGACTTGTCACTCAGATGCTCTGTAAATCCAATGTTGGTCAAGTCATCTTCTTCAGCTAACTGCATGCACCCTTTCTGTCTCCAACCAGATTGGCATGTCCCCTCCTCCTGTACTCCCATTCTCGCTAAATCTCGAAAAATTAGCGGCGAGGTTGGTCTACTGCCACAGATTATAGTGGAGCCTACGAATGCTCGATCAAATTCGTTTGTTGGAACCTATGAATACCTTGCTCCGGAAATCATAAAAGGGGAGGGTCATGGGAGTGCTGTAGATTGGTGGACTTTTGGTATACTAATGTTTGAACTTTTATATGGTATAACTCCATTCAAGGGCCCTGCAAATCAGGATACATTAGCCAATGTTGTGTCACAGAGACTTGAGTTCCCAGATACTCCTCCTATAGTGAGTTTTCGAGCAAGAGATTTGATCAAACGATTGTTGATAAAAGACCCTCAATGTCGACTAGGATTTGTAAAGGGTGCTGCTGAGATTAGGCAGCATTGCTTCTTTGAAGGCCTCAATTGGGCTCTTATACGCTCTGCACCACCACCCAAATTTCCTCATTCACAAGATTGTCAAGCCTTTGACATGTTTTAG 2094 0.4136 MDCSFNANTCEMVETSEEELKIDENPESSCAQKSGKRYSIEDDINRLLQAIDIKNTARAPGSQKSALKKPIIVTSEPVSLKQALRGLCISQASEMAALKRMSKLSTSSRVSTNELGSNEISNSSAHHSTPTIPTRSSYRNQIVPIENQVLADSSRKDYLGSSMPDKEAMEANLNSPPSSGRGNGVDKPTSSNTSFAKPIFKDKNFLKKKVKQNLYSSSSSCSNPFTRNIGNDLASSTSDLNRVTDNSDSKNEMKENKKLSFRHSNSNSVNAGKRRSRFLVTKYDEKSRSKDKSELSQSQSPKSSTGDYCSMSEESNLISGPSCRPHMSKHARWEAIRLIEEQQQQHGNLSWRNFKMLKRLGRGDIGTVYLAQLIGTSSLFALKVVENDFLVNQKKKMSRARTEREILQMLDHPFLPTLYAHFETDKLSCLVMEYCPGGDLHVLRQRQPSKSFSEHTTRFYVAEVLLALEYLHMLGVVYRDLKPENILLREDGHIMLTDYDLSLRCSVNPMLVKSSSSANCMHPFCLQPDWHVPSSCTPILAKSRKISGEVGLLPQIIVEPTNARSNSFVGTYEYLAPEIIKGEGHGSAVDWWTFGILMFELLYGITPFKGPANQDTLANVVSQRLEFPDTPPIVSFRARDLIKRLLIKDPQCRLGFVKGAAEIRQHCFFEGLNWALIRSAPPPKFPHSQDCQAFDMF 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0030 697 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 176 689 - -
Aed5g0030 697 MobiDBLite consensus disorder prediction 277 295 - -
Aed5g0030 697 MobiDBLite consensus disorder prediction 167 196 - -
Aed5g0030 697 MobiDBLite consensus disorder prediction 216 244 - -
Aed5g0030 697 MobiDBLite consensus disorder prediction 245 261 - -
Aed5g0030 697 Gene3D Transferase(Phosphotransferase) domain 1 562 687 - -
Aed5g0030 697 MobiDBLite consensus disorder prediction 296 322 - -
Aed5g0030 697 MobiDBLite consensus disorder prediction 103 140 - -
Aed5g0030 697 PANTHER FLIPPASE KINASE 1-RELATED 6 162 - -
Aed5g0030 697 SUPERFAMILY Protein kinase-like (PK-like) 339 687 IPR011009 -
Aed5g0030 697 ProSiteProfiles Protein kinase domain profile. 354 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0030 697 Gene3D Transferase(Phosphotransferase) domain 1 435 505 - -
Aed5g0030 697 PANTHER FLIPPASE KINASE 1-RELATED 176 689 - -
Aed5g0030 697 SMART serkin_6 354 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0030 697 Pfam Protein kinase domain 355 509 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0030 697 Pfam Protein kinase domain 565 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed5g0030 697 CDD STKc_phototropin_like 354 686 - -
Aed5g0030 697 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL1 ISOFORM X1 6 162 - -
Aed5g0030 697 Gene3D Phosphorylase Kinase; domain 1 353 434 - -
Aed5g0030 697 MobiDBLite consensus disorder prediction 172 196 - -
Aed5g0030 697 MobiDBLite consensus disorder prediction 216 324 - -
Aed5g0030 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 476 488 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0030 Aed-Chr5 272604 275030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0030 284 690 AGC Kinase Gene Family AT2G36350 58.998 1.72e-172 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Aed5g0030 Pkinase 1.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0030 - - gmx:100802592 977.237