Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0025 ATGCTTTATGGGACACTGTTGAAAGAAATTGCTGTAATTATAAGCCTGGCACTAATGCCCTGTCCTGAAATGCCTGCAGCACAACCCAAAGCTGGGTCAACCCAAGCAACAAGGTTGACTGCTGCTCGTCAGATAGGGGACATTGCAAAATCACACCCTCAAGACTTAACCAGTCTTCTTAAGAAGGTTTCTCAATATTTGCGCAGTAAAAATTGGGATACACGAGTTGCAGCTGCTCATGCAATTGGGTCGATTGCTGAGAATGTTAAGCACATAAGTTTGACTGAACTTTTTGCTTGTGTTGTATCGAAAATGTCTGAGAATGGGATATCTTGTAGCATTGAGGATCTATATTTACTGTCCCTTGACAGCTTTGATATGAACAAGGTGCTTGAATTTGGAGCCTTATTAGCATCAGGAGGACAGGAATATGATATTGGAAATGATAATATAAAGAACCCAAAGGAGCGCTTGGTTCGTCAGAAGCAAAATCTTCGACGTCGTTTAGGTTTGGATGTCTGTGAACAATTTATGGATATCAGTGATGTAATAAGAGATGAAGATCTTATGGCATCCAAATCAGACTCACATCTGAATGGGATAGATCGTAGAGTTTTTACATCTTGTTCTGCACATAACATCCAGAAAATGGTTTCAAACATGGTTCCTAGTGTCAAATCAAAGTGGCCAAGCGCAAGAGAATTGAATCTTCTAAAGCGTAAAGCAAAAATAAACTCTAAGGACCAAACAAAAAACTGGTGTGAAGATGGAAGTACAGAGGCATTAGGTGCTCAAAATTTGACTTCAAAAGGCACATGTCCTGATTCGGGATTCATGGGTGTTAATCATGATGAAGATGGCTTTGAGCATGATGGGGATGGACAATGGCCTTTCCACACTTTTGTTGAGCAACTTATTATTGATATGTTTGATTCTGTTTGGGAGGTACGACATGGTAGCGTGATGGCTTTGAGAGAGATTTTAGCACATCAAGGTGCTTCTGCAGGAGTATTTAAATCTGACTCACGGATGGGTGGGACCTTGTTTATTGAATTAGAAGACAAAAGTGTACCTAATATATTGAAGAGAGAGAGGGAAATTGATTTAAATATGCAAGTTTCAGCAGATGAGTTGGTTTCAAACTTGAAGAGGCCAAAACTTGAAGATGTATCATCGTCAACCTCTATGGATAGTGTGATGATTTGCAACAATGAAGGTGATACTGAAATGAGCATTAGTTCTGAAACCCATGGATTCAATTTAACTGTGGATTATGGGAATGGGCAATTTAATGGTAATTCTGTTGACATGGATTACTCTGATGGCTTACGTGATGCATGCAAGGATCCTGCTAATATAGCAGAACAGAAGGATTATTCTGATGATAATAAGATTCCCTCTGGAAATCTTAGTGTGCTAAGAAATCTTCCCCAGAATTGTGAGGTGATGAACTCAGTTAAAGTGGCCAGAAGTTCCTGGCTTCAAAACTGTGAATTTCTTCAAGACTGTGTGATACGCTTTTTGTGTGTATTGTCACTTGATCGCTTTGGAGATTATGTATCTGATCAGGTTGTTGCTCCAGTGCGTGAAACTTGTGCACAGGCATTAGGTGCTGCATTTAAGTATATGCATCCCGCACTAGTAAATGAAACATTGAACATATTGTTGAAAATGCAGTGTAGGCCAGAATGGGAGATTCGTCATGGCAGTCTTCTTGGTATCAAATATTTGGTTGCCGTACGGCAGGAGATGCTTTCTGATTTGCTTGGACGTGTTCTTCCTTCTTGTAAATCTGGGTTGGAGGACCCAGATGATGATGTCCGAGCAGTTGCTGCTGATGCTTTAATACCAGCTGCATCTGCAATTGTTTCCTTGCAGGGTCAAACATTGCATTCAATTGTAATGCTTTTATGGGATATATTGCTTGATTTGGATGATTTAAGTCCATCCACCAGCAGTGTAATGAATCTGCTGGCAGAAATCTATTCTCAAGAAGATATGGCCCCAAATATGTATAAAGTTTTTAAATTGGGAGACAAGGAAATGGAGAATGGAGACGATGGAGAAGAAAATCCTTATGTACTTTCAACATTGGCACCACGTTTGTGGCCCTTTATGAGGCATAGTATCACATCTGTTCGTTATTCTGCGATACGGACTTTGGAGAGGCTACTTGAAGCTGGATATAAAAGAAGCATGTCTGAGTTGTCTAGTGCTACCTTCTGGCCCTCTTTTATCTTTGGAGATACCCTTAGAATTGTCTTCCAGAATCTGCTATTGGAAACAAATGAGGATATTTTGCAATGTTCTGAGAGAGTTTGGAGTCTCCTTGTTCAGTGTTCTGTGGAGGACTTGGAGATCGCTGTGAGGTCTTACATGGCTTCTTGGATAGAACTTGCATCTACACCATTTGGCTCAGCATTAGATGACTCAAAGATGTATTGGCCTGTTGCCTTTCCACGAAAAAGTCAAATTAGAGCGGCTGCTAAAATGAGAGCTGCAAAAATTGAAAATGAATGTGGTGTGGATTTTAGGCTTGATTCTATAAAAGGAACTATTCCACAAGATAGAAATGGAGATGTTCCTATGAATTCTGTTAAGATAGTTGTTGGTGCTGATGTGGACACGTCTGTAACTCATACTCGGGTAGTTACAGCAACTGCTTTGGGAATTTTTGCTTCTAAGCTGCCAGATGGTTCTTTAAAATATGTGATTGATCCACTTTGGAACTCTCTAACCTCGTTGTCTGGTGTGCAACGCCAGGTTGCATCTATGGTACTTATTTCTTGGTTCAAGGAGATTAAGAACAGAAATTCGTCCAAAAGCCTTGACAGTATCCCTGGTGCCCTCAAAGATTGGTTGCTAGACTTATTAGCATGTTCTGACCCAGCTTTCCCAACAAAGGATTCGCTTCTTCCTTATGCTGAGCTTTCCAGAACATATGGGAAGATGCGCAATGAGGCTGGTCAATTACTAAATGTAATCAACTCTTCTGGTATGTTTAATGAGTTACTCACAGCTACCCAAATTGAGTTGGATCGTTTGAATGTGGATGATGCCATTGGTTTTGCATCAAAAATTCCAGCTTTGTGTAATGATAGTTCTGCAAAAGAATCCTTGGGAATGAACATGGATGATATTGAATCTTCGAAACAGAGACTCTTAACAACTTCTGGATATTTAAAATGTGTCCAGAGTAATTTGCATGTTACAGTCACATCTGCAGTTGCAGCTGCAGTTGTCTGGATGTCTGAATTTCCTACACGACTTACCCCAATTATTTTGCCTTTAATGGCTTCAATCAAACGGGAGCAGGAGGAAATACTGCAAATGAAGTCAGCTGAGGCTCTTGCTGAGTTAATGTACCACTGTGTTGCACGAAGACCTTGCCCCAATGATAAATTAATTAAGAATATATGTAGTTTAACTTGCATGGATCCCTTTGAGACCCCTCAAGCCAAATCCCTTTGTACCATGGAGAGTATTGATGACCAAGGTCTTCTGTCTTTTAGAACTCCTGTGAGCAAACAGAAGTCAAAGGTTCACGTGCTGGCTGGTGAAGATCGGTCAAAGGTGGAGGGATTTTTAAGTAGACGGGGATCTGAGCTAGCATTGAGGCTTCTATGTGAGAAGTTTGGTGCATCATTATTTGATAAGCTTCCTAAGTTGTGGGATTGCCTTACTGAAGTGCTTAAGCCCAACTCCTCTGAATCACTACTTGTCACTAATGAAAAGCAAGTTATCGTGTCTATTGAGTCTGTTAGTGATCCTCAGACATTGATTAACAATATCCAGGTGGTGCGTTCTGTTGCTCCCGTCTTAAATGAGGAGTTGAAGCCAAAATTGTTGACACTTCTCCCATGCATTTTCAAATGTGTGCAGCATTCTCATGTTGCAGTTAGATTAGCTGCTTCACGCTGCATCACTTCCATGGCACAGCCAATGACTGTGAAAGTTATGGGAGCTGTGGTTGAAACTGCTATCCCTATGTTGGAAGATGCATCATCAGTTTATGCTAGACAAGGAGCAGGCATGTTGATTAGTTTTCTTGTTCAGGGGTTGGGTGTAGAGTTGGTCCCTTATGCTCCTCTATTGGTGGTTCCACTTCTAAGGTGCATGAGTGATTGTGATCAGTCTGTCAGACAGAGTGTGACCCATAGTTTTGCTGCTCTTGTACCTTTACTTCCTTTGGCGCGAGGCCTTCCTCAACCGATTGGATTAGGGGAAGGTGTCTCTAGAAATGCAGAAGATTTGCAGTTTTTGGAGCAACTACTTGACAACTCTCATATTGAAGATTACAAGTTGTGCACTGAATTGAAAGTAACATTGAGGAGGTACCAGCAGGAAGGCATAAATTGGTTAGCTTTTTTGAAACGTTTCAAGCTTCATGGAATTTTATGTGATGACATGGGACTTGGAAAGACACTGCAAGCATCAGCAATTGTGGCCTCTGATATAGCTGAGCATCGAACTTCAATTGGGAATGAGGATCTTCTGCCATCTTTAATTATTTGCCCATCAACTCTAGTTGGGCACTGGGCCTTTGAGATAGAGAAGTATATTGATGATTCTGTTATCTCTAGTCTTCAATATGTTGGTTCTGCTCAGGAGCGAATGCTTCTTCGGGATCATTTTTGCAAGCATAATGTCATCATAACATCATATGATGTTGTCCGTAAAGATATTGATTTTCTGGGACAGCTGCTGTGGAATCACTGTATCCTAGATGAAGGTCATATAATCAAGAATGCCAAATCTAAAGTTACACTTGCTGTAAAACAGTTGAAAGCCCAACACCGCTTGATATTGAGTGGGACACCTATACAGAATAACATAATGGACTTGTGGTCCCTTTTTGATTTTCTGATGCCTGGATTTCTTGGAACTGAGAGACAGTTCCAAGCCGCATATGGAAAACCACTTTTAGCTGCAAGAGATCCAAAATGCTCTGCTAAGGATGCTGAAGCAGGAGCACTTGCTATGGAGGCATTGCATAAGCAGGTAATGCCTTTCCTTCTTCGTAGGACAAAGGACGAAGTCTTGTCTGATCTACCAGAGAAAATAATTCAAGACAGATACTGTGATTTGAGCCCTGTACAACTTAAACTTTATGACCAGTTTTCTGGTTCCCGTGTAAAACAAGAAATGTCATCTGTTGTAACAACGAATGAATCCGCTGCAGCAGAAGGAAGTAGCAGTTCTACTAAAGCATCTTCACATGTTTTCCAGGCGCTCCAATACTTGCTAAAACTCTGTAGTCATCCATTGCTTGTCATTGGTGAGAAGATTCCAGATTCACTTTCTACTAGCCTCTTAGAACTGTTTCCTGCTGGCTCTGATGTTATTTCAGAACTTCACAAACTCTATCACTCCCCAAAATTAGTTGCTCTTCATGAGATTCTTGAAGAGTGTGGAATTGGAGTTGATAATTCAGGTTCTGAGGGTGCAGTTAATGTTGGGCAGCATAGGGTCTTGATATTCGCTCAACATAAGGCTTTCCTGGATATAATTGAAAGAGATTTGTTTCACACACACATGAAAAGTGTCACATATTTGCGGTTGGATGGATCAGTTGAGCCAGAAAAGCGTTTTGATATTGTCAAAGCTTTCAATTCAGACCCTACCATTGATGCCTTACTGCTTACAACACATGTCGGTGGGCTTGGTTTGAACCTGACATCTGCAGATACCCTTGTTTTTGTGGAGCATGACTGGAATCCAATGCGAGACCATCAGGCTATGGATAGAGCACACAGGTTAGGTCAGAAAAAAGTAGTTAATGTCCATCGGCTAATAATGCGTGGTACTTTGGAAGAGAAAGTTATGAATCTACAAAGGTTCAAATTGTCAGTGGCTAATGCTGTCATTAATGCTGAAAATGCTAGTATGAAAACAATGAATACAGATCAGTTGCTTGATTTATTTGCATCAGCAGAATCATCTAAGAAGGGTGCACCTGTTGTGAAGAGTTCAGAGAACAAGTCTGATGTAGACGCTAAATTAGTAGGCGGTGGGAAGGGATTGAAATCAATACTGGGGGGATTGGAGGAGCTATGGGACCAATCACAATATACAGAGGAGTACAATCTGAGTCAATTTTTAGCAAGGCTTAATGGCTAA 6120 0.4087 MLYGTLLKEIAVIISLALMPCPEMPAAQPKAGSTQATRLTAARQIGDIAKSHPQDLTSLLKKVSQYLRSKNWDTRVAAAHAIGSIAENVKHISLTELFACVVSKMSENGISCSIEDLYLLSLDSFDMNKVLEFGALLASGGQEYDIGNDNIKNPKERLVRQKQNLRRRLGLDVCEQFMDISDVIRDEDLMASKSDSHLNGIDRRVFTSCSAHNIQKMVSNMVPSVKSKWPSARELNLLKRKAKINSKDQTKNWCEDGSTEALGAQNLTSKGTCPDSGFMGVNHDEDGFEHDGDGQWPFHTFVEQLIIDMFDSVWEVRHGSVMALREILAHQGASAGVFKSDSRMGGTLFIELEDKSVPNILKREREIDLNMQVSADELVSNLKRPKLEDVSSSTSMDSVMICNNEGDTEMSISSETHGFNLTVDYGNGQFNGNSVDMDYSDGLRDACKDPANIAEQKDYSDDNKIPSGNLSVLRNLPQNCEVMNSVKVARSSWLQNCEFLQDCVIRFLCVLSLDRFGDYVSDQVVAPVRETCAQALGAAFKYMHPALVNETLNILLKMQCRPEWEIRHGSLLGIKYLVAVRQEMLSDLLGRVLPSCKSGLEDPDDDVRAVAADALIPAASAIVSLQGQTLHSIVMLLWDILLDLDDLSPSTSSVMNLLAEIYSQEDMAPNMYKVFKLGDKEMENGDDGEENPYVLSTLAPRLWPFMRHSITSVRYSAIRTLERLLEAGYKRSMSELSSATFWPSFIFGDTLRIVFQNLLLETNEDILQCSERVWSLLVQCSVEDLEIAVRSYMASWIELASTPFGSALDDSKMYWPVAFPRKSQIRAAAKMRAAKIENECGVDFRLDSIKGTIPQDRNGDVPMNSVKIVVGADVDTSVTHTRVVTATALGIFASKLPDGSLKYVIDPLWNSLTSLSGVQRQVASMVLISWFKEIKNRNSSKSLDSIPGALKDWLLDLLACSDPAFPTKDSLLPYAELSRTYGKMRNEAGQLLNVINSSGMFNELLTATQIELDRLNVDDAIGFASKIPALCNDSSAKESLGMNMDDIESSKQRLLTTSGYLKCVQSNLHVTVTSAVAAAVVWMSEFPTRLTPIILPLMASIKREQEEILQMKSAEALAELMYHCVARRPCPNDKLIKNICSLTCMDPFETPQAKSLCTMESIDDQGLLSFRTPVSKQKSKVHVLAGEDRSKVEGFLSRRGSELALRLLCEKFGASLFDKLPKLWDCLTEVLKPNSSESLLVTNEKQVIVSIESVSDPQTLINNIQVVRSVAPVLNEELKPKLLTLLPCIFKCVQHSHVAVRLAASRCITSMAQPMTVKVMGAVVETAIPMLEDASSVYARQGAGMLISFLVQGLGVELVPYAPLLVVPLLRCMSDCDQSVRQSVTHSFAALVPLLPLARGLPQPIGLGEGVSRNAEDLQFLEQLLDNSHIEDYKLCTELKVTLRRYQQEGINWLAFLKRFKLHGILCDDMGLGKTLQASAIVASDIAEHRTSIGNEDLLPSLIICPSTLVGHWAFEIEKYIDDSVISSLQYVGSAQERMLLRDHFCKHNVIITSYDVVRKDIDFLGQLLWNHCILDEGHIIKNAKSKVTLAVKQLKAQHRLILSGTPIQNNIMDLWSLFDFLMPGFLGTERQFQAAYGKPLLAARDPKCSAKDAEAGALAMEALHKQVMPFLLRRTKDEVLSDLPEKIIQDRYCDLSPVQLKLYDQFSGSRVKQEMSSVVTTNESAAAEGSSSSTKASSHVFQALQYLLKLCSHPLLVIGEKIPDSLSTSLLELFPAGSDVISELHKLYHSPKLVALHEILEECGIGVDNSGSEGAVNVGQHRVLIFAQHKAFLDIIERDLFHTHMKSVTYLRLDGSVEPEKRFDIVKAFNSDPTIDALLLTTHVGGLGLNLTSADTLVFVEHDWNPMRDHQAMDRAHRLGQKKVVNVHRLIMRGTLEEKVMNLQRFKLSVANAVINAENASMKTMNTDQLLDLFASAESSKKGAPVVKSSENKSDVDAKLVGGGKGLKSILGGLEELWDQSQYTEEYNLSQFLARLNG 2039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0025 2039 Gene3D - 493 676 IPR011989 -
Aed5g0025 2039 Pfam Domain of unknown function (DUF3535) 773 1226 IPR022707 -
Aed5g0025 2039 Pfam SNF2-related domain 1461 1757 IPR000330 GO:0005524|GO:0140658
Aed5g0025 2039 CDD DEXHc_Mot1 1443 1675 IPR044078 GO:0005524
Aed5g0025 2039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1676 1977 IPR027417 -
Aed5g0025 2039 CDD SF2_C_SNF 1790 1932 - -
Aed5g0025 2039 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1811 1967 IPR001650 -
Aed5g0025 2039 SMART ultradead3 1439 1635 IPR014001 -
Aed5g0025 2039 Gene3D - 27 102 IPR011989 -
Aed5g0025 2039 SMART helicmild6 1835 1921 IPR001650 -
Aed5g0025 2039 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1455 1625 IPR014001 -
Aed5g0025 2039 SUPERFAMILY ARM repeat 34 1482 IPR016024 -
Aed5g0025 2039 Gene3D - 1415 1674 IPR038718 -
Aed5g0025 2039 PANTHER TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 31 1971 IPR044972 GO:0003677|GO:0016887|GO:0017025
Aed5g0025 2039 Gene3D - 1088 1401 IPR011989 -
Aed5g0025 2039 Gene3D - 1685 2001 IPR027417 -
Aed5g0025 2039 Pfam Helicase conserved C-terminal domain 1819 1921 IPR001650 -
Aed5g0025 2039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1426 1675 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0025 Aed-Chr5 229125 251693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0025 1438 1976 RAD5 or RAD16-like Gene Family AT1G02670 25.667 6.93e-38 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed5g0025 DUF3535 2.2e-104 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0025 K15192 - gmx:100777977 3648.21