Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0016 ATGGAGTGGAAGGGGTCCAAGTCCAAATTGCAGAAGCAGACAAACTTGAAAGCAAAGCGGTTTGGTTTGGAACTTGATGAGCCCACTGGTCAAACTAAAACACCTGAAATCTTCATCTTAGACGATTCCGTACCTTGTAGAGTTCGGGCTAAGCGTGGCTGTGCTACGCATCCCAGGAGTATTGCTGAAAGGGTTCGCAGGACTCGTATCAGTGACCGCATCAGAAAGCTTCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCAGATATGTTAGATGAGGCTGTAGCGTATGTCAAGTTTCTACAAAAGCAAATTGAGGAATTGTCAGAGCACCAACGGAGGTGTAAATGCGTGGTTCAAGAGTAA 375 0.4507 MEWKGSKSKLQKQTNLKAKRFGLELDEPTGQTKTPEIFILDDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLDEAVAYVKFLQKQIEELSEHQRRCKCVVQE 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0016 124 Gene3D - 55 124 IPR036638 GO:0046983
Aed5g0016 124 Pfam Helix-loop-helix DNA-binding domain 59 105 IPR011598 GO:0046983
Aed5g0016 124 PANTHER TRANSCRIPTION FACTOR BHLH117-RELATED 39 118 - -
Aed5g0016 124 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 121 IPR036638 GO:0046983
Aed5g0016 124 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 39 118 - -
Aed5g0016 124 Coils Coil 94 124 - -
Aed5g0016 124 SMART finulus 60 110 IPR011598 GO:0046983
Aed5g0016 124 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 104 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0016 Aed-Chr5 165364 167948 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0016 28 124 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 72.000 3.12e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed5g0016 HLH 5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0016 - - gmx:100527723 177.948