Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed5g0012 ATGGTAGGAAAAAAAAAAAACAAGAGAGTGGCGACGTTATTAAATTCAAAACCACTCTCTCGTCACAACCCGCTCACTTTCTCTCTCTATTTCTTTTATATATATGCGAAGCCAAGCAACAACAACACATCCAGTCTCACAATGAGTAAGCCGCAGCTTCCGTGCGACAGCGAAGGCGCGTGTATGGCGTGCAAGACCGTGCCTGGGGAAGAAGACAGACTCTTATGCATCACGTGTGACACCCCTTGGCACGTGCCATGTCTGTCCGCCCCTCCGGCCATTCTGGCAGCCACCAGTCGCTGGCTATGCCCTGATTGTTCTATTCTGGACTCTGATGTTCCACCAATCCCCGCTCCCGTCCGCAACGAACTCGTGACTGCAATGTTGGCTGTTGAAAACGACGATTCACTCACCCAAAATGATAAAGCCAGAAGACGTCAAGAACTTATGACCGGAAAGGCTCCCGCAGAAGACGAGAACAAAGTGTCATCCGTATCGGATATTCTCTCTGGATCTCTTATCTGCTCCATCTGTATCAATTTAACGGAGAGACCCGTCACGACTCCCTGTGGACACAGTTTCTGTTTGAAGTGCTTTGAGAAATGGGTTCGGCAAGGGAAGAGGAAGTGTGCCAAGTGCCGGAAGACTATTCCGGAGAAGATGGCAAGGCAGCCCCGTATAAATGCTGCATTGGTATTTGCAATACGCATGGCGAGGCAGGATTTAAGAAATAATGGCAGTGGCGGAGGAGTGAGGAGTACTAACCATTTCTTTCACAATCAAGATAGACCTGACGAGCCATTTACTACTGAGAGGGCACAGAGGAGTGGTCGTGCGAACGCGGCTAGTGGAAAGATATTCGTGACAGTGCCTACGGATCATTTTGGTCCAATAACAGCAGAGAATGACCCTGTGCGGAATCAAGGTCTGCTGGTTGGTGAATGCTGGAGAGACCGACTCGAATGCAGGCAGTGGGGTGCTCACTTCGTCCCTGTGGGTGGCATTGCTGGACAATCAGACCGCGGTGCTCAGTCTGTTGTTCTTTCTGGTGGTTATGTCGATGACCAAGATCATGGAGAATGGTTTCTCTACACTGGCAGCGGCGGTAAGGATCTCAGCGGCAACAAACGCACCAACAAGAGTCACTCTTTTGATCAGAAGTTTGAGAAGTACAACCGTGCACTTCAAGTTAGTTGTCTCCAGGGTTATCCACTTCGAGTTGTCAGCAGATCTCACAAAGAAAAGCGATCCTCATATGCCCCCGAGACTGGTGTGCGGTATGATGGAATTTATAGAATTGAAAAGTGCTGGCAGATAGCCGGATTACAGGGTTTCAAAGTTTGCCGCTATCTATTCGTTAGGTCTGACAATGAACCTGCCCCTTGGACAAGTTATGATCATGGAGATAGGCCCAGACCCTTGCCGGTCATTCGTGAACTGAAAAAGGCTACAGTCATATATGAAAGGACCGAAACTCCATCTTGGGATTTTGATGAGGAAGATTCTCGTTGGAAATGGAAGAAACCACCACCTCTCAGCAGAAAAAAAGTACAAAATTTGGAACCCGTAGAGGTAGCAAGGGCAAAGTCAAATGAAGAAGTAAATAAATTCCAACTTAAGTCAATCAAGGAACAATTGCAGAGAGGGTTCTCGTGCATGATATGCAAGGAGGTTATGGTTTCACCAGTGACAACACCGTGTGCTCATAACTTCTGCAAGTCCTGTTTGGAAGGTGAATTTGCTGGTCAGGCTTTTGTGAAGGAGAGAAGTAGGGGTGGGAGAACACTTCGGTCCCAAAAAAATGTGATGAAATGCCCATCTTGTTCTATTGACATTTCTGATTATCTTCAGAACATTCAGGTTGATGTAGATTTGAAGAGTGCAATTGAGTCATTGAAAGCTAAGGTTGAAGAAATTGGAGAATCGTTGGAGTCAAGTGAAGATGCAGATGGATTACAGGATTTACAGGATGATGGTGTTGGCAAGGATGGAGATACTGACTCAGAAAACAAAAATTCTGTAGAGGAGTTGAATGGTCTACCTGAAGGATTTGATGTTGGTGAGCTTACAGATGGATTCCAGGATGATGGCACTGGCAAGGATGGAGATACTGACTCAGGAAACAAAGATTCTGTAGAGGAGTTGAATGGTCTATCTGAAGGATCTGATGTTGGTGGGCTTAAGGATATCAATAAAGGGCCAGATCCAGCAGTGAAGTGCAATGGAAAGAGAAAGAAAGGTGATTGTGGAAATCAATTGCCTGATGATAAAATGGATAAAAGAGGTAAAATATACAAGAAGACTGAGGAAGCATTACATGAAGAAAATGATTCTTCATCAAGTCCTCTCAACCCTCCATGA 2361 0.4596 MVGKKKNKRVATLLNSKPLSRHNPLTFSLYFFYIYAKPSNNNTSSLTMSKPQLPCDSEGACMACKTVPGEEDRLLCITCDTPWHVPCLSAPPAILAATSRWLCPDCSILDSDVPPIPAPVRNELVTAMLAVENDDSLTQNDKARRRQELMTGKAPAEDENKVSSVSDILSGSLICSICINLTERPVTTPCGHSFCLKCFEKWVRQGKRKCAKCRKTIPEKMARQPRINAALVFAIRMARQDLRNNGSGGGVRSTNHFFHNQDRPDEPFTTERAQRSGRANAASGKIFVTVPTDHFGPITAENDPVRNQGLLVGECWRDRLECRQWGAHFVPVGGIAGQSDRGAQSVVLSGGYVDDQDHGEWFLYTGSGGKDLSGNKRTNKSHSFDQKFEKYNRALQVSCLQGYPLRVVSRSHKEKRSSYAPETGVRYDGIYRIEKCWQIAGLQGFKVCRYLFVRSDNEPAPWTSYDHGDRPRPLPVIRELKKATVIYERTETPSWDFDEEDSRWKWKKPPPLSRKKVQNLEPVEVARAKSNEEVNKFQLKSIKEQLQRGFSCMICKEVMVSPVTTPCAHNFCKSCLEGEFAGQAFVKERSRGGRTLRSQKNVMKCPSCSIDISDYLQNIQVDVDLKSAIESLKAKVEEIGESLESSEDADGLQDLQDDGVGKDGDTDSENKNSVEELNGLPEGFDVGELTDGFQDDGTGKDGDTDSGNKDSVEELNGLSEGSDVGGLKDINKGPDPAVKCNGKRKKGDCGNQLPDDKMDKRGKIYKKTEEALHEENDSSSSPLNPP 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed5g0012 786 ProSiteProfiles YDG domain profile. 305 454 IPR003105 -
Aed5g0012 786 SMART PHD_3 60 107 IPR001965 -
Aed5g0012 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 240 IPR013083 -
Aed5g0012 786 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 50 675 IPR045134 -
Aed5g0012 786 SUPERFAMILY RING/U-box 168 228 - -
Aed5g0012 786 SUPERFAMILY FYVE/PHD zinc finger 52 113 IPR011011 -
Aed5g0012 786 MobiDBLite consensus disorder prediction 655 672 - -
Aed5g0012 786 ProSiteProfiles Zinc finger RING-type profile. 552 609 IPR001841 -
Aed5g0012 786 Pfam RING-type zinc-finger 552 606 IPR027370 -
Aed5g0012 786 Pfam SAD/SRA domain 308 457 IPR003105 -
Aed5g0012 786 ProSiteProfiles Zinc finger RING-type profile. 175 214 IPR001841 -
Aed5g0012 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 109 IPR013083 -
Aed5g0012 786 MobiDBLite consensus disorder prediction 641 786 - -
Aed5g0012 786 Pfam Zinc finger, C3HC4 type (RING finger) 175 213 IPR018957 GO:0046872
Aed5g0012 786 ProSitePatterns Zinc finger RING-type signature. 567 576 IPR017907 -
Aed5g0012 786 SUPERFAMILY PUA domain-like 279 478 IPR015947 -
Aed5g0012 786 Coils Coil 629 649 - -
Aed5g0012 786 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 50 675 - -
Aed5g0012 786 Gene3D - 276 474 IPR036987 -
Aed5g0012 786 SUPERFAMILY RING/U-box 544 633 - -
Aed5g0012 786 CDD RING-HC 175 213 - -
Aed5g0012 786 SMART ring_2 552 608 IPR001841 -
Aed5g0012 786 SMART ring_2 61 106 IPR001841 -
Aed5g0012 786 SMART ring_2 175 213 IPR001841 -
Aed5g0012 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 530 651 IPR013083 -
Aed5g0012 786 MobiDBLite consensus disorder prediction 738 776 - -
Aed5g0012 786 ProSitePatterns Zinc finger PHD-type signature. 61 106 IPR019786 -
Aed5g0012 786 MobiDBLite consensus disorder prediction 694 710 - -
Aed5g0012 786 SMART G9a_1 300 458 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed5g0012 Aed-Chr5 147308 150639 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed5g0012 52 643 C2H2 Transcription Factor Family AT5G39550 55.907 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed5g0012 K10638 - gmx:100801535 1238.02