Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2623 ATGATGGTGGAGGTTTCGAATTTGAGAGCGCGTGAGGAATTCGAGGTTTCGGAGCGTGCGAATTCAGGTTTTTGGGTGAATGGAAGGGTCCGGGCACGAGAACGGGAGAGGCTTCAGATTTATTATGATTTATTGGCTACTGAGCCAATCTTTCAAAGATATCCGCGGCCTGAGAAGGAGTACCAGTCGTTTTCTCTCATTTACAACGATAGATCATTAGACTTGATTTGTAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTAAAAGCATTAATTTCTCGCAGCCATCATCGGAAGTGGAGACCAGAGTCAAGAAGTGATAGTATTCCATCTGAAGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCCTTGAATTCTCCATTTGGTAGTAATGAAAGCTTGCAAAAGGACAGTGGGGATCATCTTCGCCTTCATAGCCCATACGAAAGCCCCCCTAAGAATGGTTTGGATAAAACATTTTCTGATGTGATTTATTATCCTATTCCTCCAATGGGTTTCTTCCCTTCAGATTCTGCCAGTGGTTCACTCCACTCTGTGTCATCAGGAGGATCAGATAGCATGCACAGTCAAATGAAGACAATGCCTATGGATGCTTTTAGAGTTAGTCTTTCAAGTGCAGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTGGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTACTGGGTGGTGGGGCTCACCATGTTGGGAGTAATTTTGGTGTCAAAATGGATTCTCTGTTGCCCAAAGCCTTGGAATCAGCAGTAGTTCTTGATGTACAGACTATTGCTTGTGGTGGGAAACATGCTGCCTTAGTGACCAAACAAGGTGAAATTTTTTCCTGGGGGGAAGAATCAGGAGGAAGGCTTGGGCATGGAGTTGATTCTAATGTTCCCCATCCAAAGCTTATTGAATCTCTAAGTAATACAAATATCGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTGGGGCATGGAAATCAGGTGAGCCACTGGGTCCCAAAGAGAGTATATGGCCCTTTGGAGGGCATACATGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTTACCTCTTCAGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCAAAAAAGTGTTTCCTTGCCTAGGGAAATAGAGTCCCTGAAGGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCTGTTGTGGAGGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACATGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAATCAAAACTTGTTCCAACCTGTGTCGTGACTCTTGTTGAACCTAATTTTTGTCAAGTTGCTTGTGGTCATAGTATGACTGTAGCACTTTCTAGATCGGGCCATGTCTATACAATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATACTCAAGCTGATGGGAAGCTACCAACCCGTGTCGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTTCACATGGGGGAAGGGTGCAAATGGTCGTTTAGGCCATGGGGATACTAATGATAGAAACAGCCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTAAAAAGTATTGCCTGTGGTACAAATTTCACTGCAACCATATGCCTGCATAAGTGGGTATCTGGTGTTGACCAGTCCATGTGTTCTGGTTGCCGTGTGCCATTCAATTTCAAAAGGAAACGCCACAATTGTTATAACTGTGGACTTGTTTTTTGTCATTCATGCAGTAGTAAGAAATCTGTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAAATAAGGAAAACTACAGAAACCGATTATTCATCTCAGTCTTCTATGAGCAGAAGAGGAAGTGTTAATCAGGGGTCACTTGAGTTTATTGGTAAGGATGATAAATTGGATTCCAGATCTCATAATCAACTTGCCAGGTTTTCTTCAATGGAATCCTTGAAACAAGTGGACAGCAGATCTTCAAAGAAAAACAAAAAATTGGAATTCAACAGTAGCCGTGTCTCACCTGCTCCAAATGGTGGTTCACAGTGGGGAACAATGAATATTTCTAAATCTTTTAATCCTATTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCCAGAATTGTTTCCCGGGCAACATCCCCAATATCTAGACGACCTAGTCCACCTCGTTCAACTACTCCAACCCCAACACTGGGGGGACTCTCATCCCCAAAGATAGTTGTGGATGATGCTAAGAGAACCAATGACAACCTCAGTCAGGAGGTTATTAAATTACGATCGCAGGTGGAAAACCTGAGTCGGAAAGCCCAGCTTCAAGAAGTTGAGTTGGAAAGAACAACTAAACAATTGAAGGAAGCAATAGCAATTGCAAGCGAAGAAACTGCAAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCACTCACTGCCCAGTTGAAGGACATGGCTGAAAGGCTACCTGTAGGAGCATCTAAGAATGTCAGATCACCGCCCCCTCTTGCTTCCTTTGGCTCAAATCCTGCTTCCAATGACCTTACCAATTCTTCCTTTGATCGGTTGAATATTCAAGCAACAAGCCCAGAATCAGACTCAACTGGATCCAATAATCAGTTACTTTCAAATGGATCAAGCACCATCACCAACCGGAGTGCAGGTCACACTAAACACAGTCAATCAGATGCAACTAGCAGAAATGGGAATAAAACAAAGGATAATGAGACTGAATGGGTTGAACAAGATGAACCTGGTGTATATATTACTCTCACCTCCCTACCAGGAGGTGTAATAGATCTTAAAAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCTGAGAATCGGGTAAGAGTATATGAACAATACAATGTGCGCATGATTGACAAGTCGACAATTGGTGTTGGGAGTGAGGACCGGGCCCATTGA 3216 0.4335 MMVEVSNLRAREEFEVSERANSGFWVNGRVRARERERLQIYYDLLATEPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRPESRSDSIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKTFSDVIYYPIPPMGFFPSDSASGSLHSVSSGGSDSMHSQMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGAHHVGSNFGVKMDSLLPKALESAVVLDVQTIACGGKHAALVTKQGEIFSWGEESGGRLGHGVDSNVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVYGPLEGIHVSSISCGPWHTAVVTSSGQLFTFGDGTFGVLGHGDQKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKESKLVPTCVVTLVEPNFCQVACGHSMTVALSRSGHVYTMGSCVYGQLGNTQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVFTWGKGANGRLGHGDTNDRNSPTLVEALKDKQVKSIACGTNFTATICLHKWVSGVDQSMCSGCRVPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMAPNPNKPYRVCDNCFNKIRKTTETDYSSQSSMSRRGSVNQGSLEFIGKDDKLDSRSHNQLARFSSMESLKQVDSRSSKKNKKLEFNSSRVSPAPNGGSQWGTMNISKSFNPIFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLSSPKIVVDDAKRTNDNLSQEVIKLRSQVENLSRKAQLQEVELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPVGASKNVRSPPPLASFGSNPASNDLTNSSFDRLNIQATSPESDSTGSNNQLLSNGSSTITNRSAGHTKHSQSDATSRNGNKTKDNETEWVEQDEPGVYITLTSLPGGVIDLKRVRFSRKRFSEKQAEQWWAENRVRVYEQYNVRMIDKSTIGVGSEDRAH 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2623 1071 MobiDBLite consensus disorder prediction 801 830 - -
Aed4g2623 1071 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 389 399 IPR000408 -
Aed4g2623 1071 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 47 1057 - -
Aed4g2623 1071 SMART fyve_4 621 690 IPR000306 GO:0046872
Aed4g2623 1071 MobiDBLite consensus disorder prediction 912 1002 - -
Aed4g2623 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 234 295 IPR000408 -
Aed4g2623 1071 PRINTS Chromosome condensation regulator RCC1 signature 279 292 IPR000408 -
Aed4g2623 1071 PRINTS Chromosome condensation regulator RCC1 signature 405 419 IPR000408 -
Aed4g2623 1071 PRINTS Chromosome condensation regulator RCC1 signature 298 314 IPR000408 -
Aed4g2623 1071 PRINTS Chromosome condensation regulator RCC1 signature 566 587 IPR000408 -
Aed4g2623 1071 PRINTS Chromosome condensation regulator RCC1 signature 389 405 IPR000408 -
Aed4g2623 1071 PRINTS Chromosome condensation regulator RCC1 signature 348 364 IPR000408 -
Aed4g2623 1071 PRINTS Chromosome condensation regulator RCC1 signature 508 526 IPR000408 -
Aed4g2623 1071 Gene3D - 46 102 IPR011993 -
Aed4g2623 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 403 454 IPR000408 -
Aed4g2623 1071 ProSiteProfiles PH domain profile. 1 95 IPR001849 -
Aed4g2623 1071 MobiDBLite consensus disorder prediction 922 989 - -
Aed4g2623 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 571 622 IPR000408 -
Aed4g2623 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 696 IPR013083 -
Aed4g2623 1071 Gene3D - 462 634 IPR009091 -
Aed4g2623 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 467 518 IPR000408 -
Aed4g2623 1071 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 627 689 IPR017455 -
Aed4g2623 1071 MobiDBLite consensus disorder prediction 756 772 - -
Aed4g2623 1071 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 282 292 IPR000408 -
Aed4g2623 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 519 570 IPR000408 -
Aed4g2623 1071 Coils Coil 833 909 - -
Aed4g2623 1071 ProSiteProfiles BRX domain profile. 998 1053 IPR013591 -
Aed4g2623 1071 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 441 451 IPR000408 -
Aed4g2623 1071 Pfam Unstructured region between BRX_N and BRX domain 926 995 - -
Aed4g2623 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 348 402 IPR000408 -
Aed4g2623 1071 Pfam Transcription factor BRX N-terminal domain 884 916 IPR027988 -
Aed4g2623 1071 Pfam FYVE zinc finger 623 689 IPR000306 GO:0046872
Aed4g2623 1071 SUPERFAMILY FYVE/PHD zinc finger 623 693 IPR011011 -
Aed4g2623 1071 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 47 1057 - -
Aed4g2623 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 466 515 IPR000408 -
Aed4g2623 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 572 619 IPR000408 -
Aed4g2623 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 296 344 IPR000408 -
Aed4g2623 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 518 567 IPR000408 -
Aed4g2623 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 347 399 IPR000408 -
Aed4g2623 1071 Pfam Regulator of chromosome condensation (RCC1) repeat 402 451 IPR000408 -
Aed4g2623 1071 MobiDBLite consensus disorder prediction 109 139 - -
Aed4g2623 1071 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 296 347 IPR000408 -
Aed4g2623 1071 MobiDBLite consensus disorder prediction 731 772 - -
Aed4g2623 1071 CDD FYVE_like_SF 632 685 - -
Aed4g2623 1071 MobiDBLite consensus disorder prediction 103 159 - -
Aed4g2623 1071 Pfam Transcription factor regulating root and shoot growth via Pin3 997 1052 IPR013591 -
Aed4g2623 1071 SUPERFAMILY RCC1/BLIP-II 233 624 IPR009091 -
Aed4g2623 1071 SUPERFAMILY PH domain-like 48 94 - -
Aed4g2623 1071 Gene3D - 182 357 IPR009091 -
Aed4g2623 1071 Gene3D - 358 461 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2623 Aed-Chr4 28068060 28077123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2623 893 1062 Major Intrinsic Protein MIP AT1G31880 35.912 7.80e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2623 - - gmx:100791947 1875.52