Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2616 ATGGCTTTCTTTAAGCACTTTTCACATGATGCAGTTTCACATGGTGTTGTGGAAGATAAGGGCCAAGGACAGAATGCTGATAGATCTCATAGGTTGGTAGATAATGGATGCGCTTATGCAACTTCTAGTGAAAAAGAATTTGATATGAACATGGATGTACAGTATGAGAGTGACAGTGAACCTGATGGTAGCAGGCTGCAAAAGGAGGCAACTGCTGATGATCGAGTTGGTACAAGAGAATCAAAAATAGAAAATATTGGCAGCAAAACAGCTACTGTTGGAAGGTGGGGTACTACATTTTGGAAGGACTGCCAACCTATGTGCCCTCAGAATGGTTCTGAATTGGCACATGAATCAAAAAGTGGATCAGACAATAGAAATGCAGATGGGTCTGATGATAATTTGTCAGAAGGCAGAGAGGAAAGCTTAGACTCAGAAGATGATGATGAAATAAAGGACTCAGGAAAAGGTCCAATAGGACATTCTGATATTCCCACTGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGAGCAAAGTGACTCCTTGCATCACAGGGGTTTTCGTCAACCCACTGGATCAAATTCATGGCCTCGACAGATGTCTTCTATTGTCAAAAGGCGTATGCATAAGTCGAGGATTTCAGATGATGCTGAAGATAATGATGGTGATGCTGATTATGAAGAAGAGGGTGAAGCAGATGAAGATGATCCTGATGATGTAGACTTTGAGCCCTCAACAAGTGGTCGTGCTGTGACTAAGGATAAAGATTGGGAAGGTGAAGACTTGGATGAAGCTGATAATAGTGATGAGGGAATAGATGTCTCAGATAATGATGATTCATACTTTGATAAGAAGGCAAAGGGAAGGCAGCGAGGTAAAATTGGACGAAGTATAAGATCTTCCAGAGATTGCAAATATACCACGTCTAGTTGTCAAAGAACAGTTAAACCATCTTTTGGTGATGAAGATGACGAGTCTACAGTAGATGATTCTGACAGTGAGAGTGATGGTGATTTTAAAAGCATAAAAAAGCGAGGTGTGCATATGCACAAGAATAATAGTCGTTCAGCTGCACTGACTAGTTTTTCGATGCGCAACAGTGAAATTCGCACTTCTAGTAGGACAGTCAGGAAAGTATCATATGCTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAGAAATCCCAAAAGGAAGAAAATGAAGGGGATGATGGGGACTCCATTGAAAAGGTGCTCTGGCATCAGCCAAAGGGTCTGGCTGCAGAGGCTCAGAGGAATAATAGATCTACAGAACCTGTTTTAATGGGCCACTTGTTTGATTCTAAACCTAATTGGAATGATATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCACTGCCAGTGGAAATCTTTTGTTGAGTTGCAAAATCTCAGTGGTTTTAAGAAAGTTTTGAATTATACAAAGAAAGTGACAGAGGACATCAGGTACAGGATGACAATCTCAAGAGAGGAGATTGAGGTCAATGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAGAACAGTCAGGCAGAAAGAATAGTTGCAGATAGGATTAGCAATGATAACTCTGGCAATGCTCGTGAAGCTGCAATGTCAGTTCAGGGAAAGATGGTAGATCTTCAGCGTAAAAAGAGCAAAGCAAGTTTGCGGAAACTTGATGAACAACCTGAGTGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTCTGAATTATCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTATCAATGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTCCCATTGTCTACCTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATAATTTATGTTGGTTCTCGTGCAAGTAGAGAGGTTTGCGAACAATATGAATTTTATAATGATAAAAGGGCTGGCAGACCTATAAAATTCAATGCACTTTTGACTACATATGAAGTAGTTCTAAAGGATAAGGCTGTTCTCTCCAAGATCAAATGGAACTATCTAATGGTAGATGAGGCTCATAGACTAAAAAATAGTGAGGCACAATTGTACACTACACTTTCAGAATTTAGTACCAAGAACAAGTTGCTTGTCACTGGTACTCCACTACAAAATAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTTCTCGATCCTGTTAAGTTTAAGAGCAAGGATGAATTTCTTGCTAATCTTCATATGGAATTGAGGCCACATATGCTTCGTAGAGTAATCAAAGATGTGGAAAAATCATTACCCCCCAAAATTGAGCGTATTCTTAGGGTTGAAATGTCTCCTCTTCAGAAGCAGTATTATAAGTGGATTTTGGAACGCAACTTTCACGATTTGAACAAAGGAGTTCGAGGGAATCAGGTTTCTCTTCTAAATATTGTGGTAGAATTGAAGAAGTGCTGTAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGTTATGGTGGGGACTCTGTAAGTAGTGACAGCAGTAAATTAGAAAGAATGGTCTTTAGCAGTGGCAAGCTTGTCATACTTGATAAGCTGCTTGTTAAATTGCATGAAACAAAGCATCGTGTCCTGATTTTCTCTCAGATGGTTAGGATGTTAGATATACTGGCAGTATACATGTCACTTAGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGACAGCAAGCAATGGATCATTTCAATACACCGGGTAGTGATGATTTTTGCTTCCTTCTTTCAACGCGAGCAGGAGGTTTGGGTATCAACCTTGCCACAGCAGACACTGTTATAATATTTGATTCAGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGCAGAGCTCATCGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTCGAGGAAGATATTTTGGAACGTGCTAAGAAGAAGATGGTTCTCGACCACTTGGTGATTCAAAAACTAAATGAGGAGGGTAAATTGGAGAAGAAAGAAGCCAAAAAGGGGGGAAGCTGTTTTGACAAAAATGAGCTGTCAGCAATCTTAAGGTTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGACATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGCTAATTTCTGCAATGATGAAGATGATGGAAGTTTCTGGAGTCGTTGGATAAAGCCTGATGCCGAAGCTCTTGCTCCACGTGCTGCAAGGAATATTAAAAGCTATGCAGAGGATCATCAATCTGAAAGAAGTAGTAAAAGGAAAAAGAAGGAAAGTGAACTACCTGTGCGAGTTCAGAAACGCTGGAAAGTAGAGAATTCAGCTCCTTCAACACCGATGGTTGATGGAGCTTCGGCCCAAGTGAGAAGCTGGTCATATGGGAATTTGTCTAAGAGAGATGCACTACGATTTTCTCGCTCAGTTATGAAATTTGGGAATGAGAGCCAAATCAACTTAATTGCTTCAGAGGTTGGTGGTGCAGTAGGAGGAGCCCCATCTGAAGCACAAACTGAACTTTTCAATGCTCTAATTGATGGCTGTACAGAAGCAGTTGAACTTGGAAGTCTGGATCCCAAGGGGCCTTTGTTGGATTTCTTTGGTGTGCCAGTGAAGGCAAATGATATACTTACCCGTATTCAAGGACTCCAACTGCTGGAAAAGCGCATTAGTCGTTATGAAGATCCCATTGCACAATTCCGTGCTTTAACATATCTCAAGTCTTCAAATTGGTCGAAAGGTTGTGGGTGGAATCAAGTTGATGATGCAAGATTGCTTCTTGGAGTATATTACCATGGATTTGGTAATTGGGAAAATATAAGATTAGATGAAAGGCTTGGTCTTACAAAAAAGATTGCACCAGTGGAACTTCATCACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGTTAATGCCCTGTTGGAGCAAGAAGTTGCTTCTCTTGGTGTGAAAAATACCCATACCAAAGTTGGTAAGAAGCCTTCAAAGAAAGAGAGAGAACATCTTGTGAACGTCTCATTGTCACGTGGGCAGGAGAAAAAGAAACAATTGGCTTCTTCTAAATTTAATTTCCAAATAAGAAAAGATAGACTTCAGAAACCTCTAAAAGTTGAACCAATTGTAAAAGAGGAGGGTGAAATGTCTGATGATGAAGAAGTATATGAGCAGTTCAAGGAAGTAAAATGGATGGAATGGTGTCAAGATGTGATGATTGAGGAGATGAAAACCTTGAAACGTCTTCACAGATTGCAGACAACCAGTGCTAATCTTCCAAAGGAAAAGGTGCTTTCAAAAATCCGTAACTACTTACAACTTCTTGGGCAAAGGATAGATCAAATTGTCTTGGAACATGAAGAGGAACCCTATAAGCAAGATAGAATGACCACACGATTGTGGAAGTACGTTTCCACCTTTTCACATCTTTCAGGAGAGAGGCTTTGTCAAATTTATTCAAAACTTCAAGTGGAGAAGAATGTGGCAGGGGTTGGCCACTCTCATGCGAATGGTTCAGTATCTGGTTCATTTAGCAGGAATGGAAACCCTAACCACTCTTATCCATTCTCTCACCACATGGAGAAGCAAAGAGGATACAAAAACATGACTACCTACCAAATTCCAGAACCAATAAATATTACTGACATGTCTGAGGCATGGAAAGGAAGAAGAGCTGAAAGAAATGGCCATTTCCAGGGCCAATTACCACCTCAAAGAACTAAAGGTAATGGAATTCCAATTACGGATCCTAACTCACTGGGTATCCTTGGGGCTGGACCTTCTGACCAACGTTTTGTCAGTGAGAAGCCTTTTAAGATGCGACCTGGTGGCTATAACCTCTCAAGATTTTCTGTAGCCCTTTCAACAAATTTTGTCAGTTAA 5046 0.4043 MAFFKHFSHDAVSHGVVEDKGQGQNADRSHRLVDNGCAYATSSEKEFDMNMDVQYESDSEPDGSRLQKEATADDRVGTRESKIENIGSKTATVGRWGTTFWKDCQPMCPQNGSELAHESKSGSDNRNADGSDDNLSEGREESLDSEDDDEIKDSGKGPIGHSDIPTEEMLSDEYYEQDGEEQSDSLHHRGFRQPTGSNSWPRQMSSIVKRRMHKSRISDDAEDNDGDADYEEEGEADEDDPDDVDFEPSTSGRAVTKDKDWEGEDLDEADNSDEGIDVSDNDDSYFDKKAKGRQRGKIGRSIRSSRDCKYTTSSCQRTVKPSFGDEDDESTVDDSDSESDGDFKSIKKRGVHMHKNNSRSAALTSFSMRNSEIRTSSRTVRKVSYAESEESEEADEGKKKKSQKEENEGDDGDSIEKVLWHQPKGLAAEAQRNNRSTEPVLMGHLFDSKPNWNDMEFLIKWKGQSHLHCQWKSFVELQNLSGFKKVLNYTKKVTEDIRYRMTISREEIEVNDVSKEMDLDIIKQNSQAERIVADRISNDNSGNAREAAMSVQGKMVDLQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNYLVNSWRNDTNVILADEMGLGKTVQSVSMNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGSRASREVCEQYEFYNDKRAGRPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLVTGTPLQNSVEELWALLHFLDPVKFKSKDEFLANLHMELRPHMLRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSVSSDSSKLERMVFSSGKLVILDKLLVKLHETKHRVLIFSQMVRMLDILAVYMSLRGFQFQRLDGSTKAELRQQAMDHFNTPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNEEGKLEKKEAKKGGSCFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVANFCNDEDDGSFWSRWIKPDAEALAPRAARNIKSYAEDHQSERSSKRKKKESELPVRVQKRWKVENSAPSTPMVDGASAQVRSWSYGNLSKRDALRFSRSVMKFGNESQINLIASEVGGAVGGAPSEAQTELFNALIDGCTEAVELGSLDPKGPLLDFFGVPVKANDILTRIQGLQLLEKRISRYEDPIAQFRALTYLKSSNWSKGCGWNQVDDARLLLGVYYHGFGNWENIRLDERLGLTKKIAPVELHHHETFLPRAPNLRDRVNALLEQEVASLGVKNTHTKVGKKPSKKEREHLVNVSLSRGQEKKKQLASSKFNFQIRKDRLQKPLKVEPIVKEEGEMSDDEEVYEQFKEVKWMEWCQDVMIEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGQRIDQIVLEHEEEPYKQDRMTTRLWKYVSTFSHLSGERLCQIYSKLQVEKNVAGVGHSHANGSVSGSFSRNGNPNHSYPFSHHMEKQRGYKNMTTYQIPEPINITDMSEAWKGRRAERNGHFQGQLPPQRTKGNGIPITDPNSLGILGAGPSDQRFVSEKPFKMRPGGYNLSRFSVALSTNFVS 1681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2616 1681 SUPERFAMILY Chromo domain-like 411 493 IPR016197 -
Aed4g2616 1681 Pfam SNF2-related domain 601 851 IPR000330 GO:0005524|GO:0140658
Aed4g2616 1681 Gene3D - 382 525 - -
Aed4g2616 1681 SMART ultradead3 578 769 IPR014001 -
Aed4g2616 1681 MobiDBLite consensus disorder prediction 119 138 - -
Aed4g2616 1681 MobiDBLite consensus disorder prediction 222 245 - -
Aed4g2616 1681 SMART helicmild6 909 993 IPR001650 -
Aed4g2616 1681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 1069 IPR027417 -
Aed4g2616 1681 Pfam Helicase conserved C-terminal domain 880 993 IPR001650 -
Aed4g2616 1681 MobiDBLite consensus disorder prediction 53 81 - -
Aed4g2616 1681 MobiDBLite consensus disorder prediction 189 205 - -
Aed4g2616 1681 Gene3D - 794 1024 IPR027417 -
Aed4g2616 1681 MobiDBLite consensus disorder prediction 263 280 - -
Aed4g2616 1681 MobiDBLite consensus disorder prediction 1129 1149 - -
Aed4g2616 1681 Pfam Domain of unknown function (DUF4208) 1450 1542 IPR025260 -
Aed4g2616 1681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 594 761 IPR014001 -
Aed4g2616 1681 SMART DUF4208_2 1438 1543 IPR025260 -
Aed4g2616 1681 MobiDBLite consensus disorder prediction 357 382 - -
Aed4g2616 1681 MobiDBLite consensus disorder prediction 58 81 - -
Aed4g2616 1681 MobiDBLite consensus disorder prediction 383 415 - -
Aed4g2616 1681 CDD SF2_C_SNF 870 1004 - -
Aed4g2616 1681 ProSiteProfiles Chromo and chromo shadow domain profile. 413 492 IPR000953 -
Aed4g2616 1681 MobiDBLite consensus disorder prediction 111 415 - -
Aed4g2616 1681 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 111 1589 - -
Aed4g2616 1681 CDD CD1_tandem 411 491 - -
Aed4g2616 1681 MobiDBLite consensus disorder prediction 305 320 - -
Aed4g2616 1681 Gene3D - 573 793 IPR038718 -
Aed4g2616 1681 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 111 1589 - -
Aed4g2616 1681 Gene3D - 1267 1381 - -
Aed4g2616 1681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 883 1034 IPR001650 -
Aed4g2616 1681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 784 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2616 Aed-Chr4 27968954 28002558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2616 604 1034 RAD5 or RAD16-like Gene Family AT1G02670 25.379 3.22e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed4g2616 SNF2_N 4.1e-57 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2616 K11367 - gmx:100792398 2583.13