Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2609 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATTCCTGTGTCACCAGCACCAATCAAAAGAAGGCCATGATGATGGGGGTGGACCGAGAGCTTGTAGAGCTTCTGTGGCAAAATGGGCATGTAGTGTTGCACAGCCAAACTCATAGAAAACCGGCTTTTAATTCAATAGCGCCGCCTTCGAGGCCGCTTCAGAGGAATTTTCAATCAACATTAAGGACTAGTGAGCCATTTGCGAACTCAAGTAACTTGATTCAAGCTGATGACACAGTCTCATGGATCAATTACCCTCTTGAGGATCCATTGGAACAAGATTTCTGTTCAAACCTTTTATCTGAACTGGCACCTTGTGAAATTGAGTCCTATACGCAAATCAAGCCATTTGAAGAGGCAAAGTTTACCAAATTGAATGCTCCTCATGTGACTGTAAGTTCACAATCACCTACTATGAAATCCTCCTCTTTTCAGGAATTTTCAGGAGGAATTCCTACACCTGCTCCAAGATTCCATGTTTCTGATTCACCCCATAATGACTTGGGTGGATCATGTAAGGACCATAACTTCTCTCACTTCTCAGCATCAGCTAGAGACAAAATTACTGGTAAAATGTCAAAAAATGAGATTAGGGAGTGTTCGTTGATGACAGTTGGATCAAGTTACTGTGGTAGCAATCACATCCCCCAAGATCCAGATGCAAGCAGGGCATCAAGCAATGGTGTCTGGACTACTACTTTATCAGCCGAGCCTGAAGCTGTTAGAGATGATGTGCCGAGAACAATTCTTCAGAATGAGAAAGGGAAATCAGAGATGCTTGAACCAACTGCAACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCATTATCTACCAGAAACCAGGGCCAAAAAAGAAAAGGAATGGATGTGGAAGAATCTGAGGAGCAAAGTGAGGACACAGCACTTGGAAACAAGTCATCTCAACGCGCAGGGTCTGCTCGAAGGAACCGTGCTGCTGAAGTGCATAATCAATCGGAAAGGAGAAGGAGAGACCGGATCAATGAGAAGATGAAGGCATTGCAGCAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCAGGAATTCAGCACTACATGTCACAAATGGGTATGGGAATGGCTACACCGCCTTTCCCTCCTACTATGCACAATCCAATGCAATTGCCGAGAGTGCCGCTTGATCAGTCTGTATCTGCATCTCAGACACCAAACCAGACATTAATGTGCCAAAATCCTATTTTGGGTGCATTTAATTACCAAAATCAGGTGCAAAATCCAGCTCTTTCAGAGCAATATGCGCGTTACATGGGCTATCAACTTATGCAAAATGCCTCTCAGCCAATGAATGTATTCAGATATGGTCCCCAGGCAGTACAACATAGTCAAACAATGATTACACCCAGCAATAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGGCTGTGAGTGGCAAAATGGGTTAA 1596 0.4361 MNNSVPDWNFGSDSCVTSTNQKKAMMMGVDRELVELLWQNGHVVLHSQTHRKPAFNSIAPPSRPLQRNFQSTLRTSEPFANSSNLIQADDTVSWINYPLEDPLEQDFCSNLLSELAPCEIESYTQIKPFEEAKFTKLNAPHVTVSSQSPTMKSSSFQEFSGGIPTPAPRFHVSDSPHNDLGGSCKDHNFSHFSASARDKITGKMSKNEIRECSLMTVGSSYCGSNHIPQDPDASRASSNGVWTTTLSAEPEAVRDDVPRTILQNEKGKSEMLEPTATSSSGGSGSSLGKTCSLSTRNQGQKRKGMDVEESEEQSEDTALGNKSSQRAGSARRNRAAEVHNQSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPMMFPGIQHYMSQMGMGMATPPFPPTMHNPMQLPRVPLDQSVSASQTPNQTLMCQNPILGAFNYQNQVQNPALSEQYARYMGYQLMQNASQPMNVFRYGPQAVQHSQTMITPSNSSGNMSGAANIDEAVSGKMG 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2609 531 SMART finulus 340 389 IPR011598 GO:0046983
Aed4g2609 531 PANTHER TRANSCRIPTION FACTOR PIF5 1 513 - -
Aed4g2609 531 MobiDBLite consensus disorder prediction 507 531 - -
Aed4g2609 531 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 513 IPR031066 -
Aed4g2609 531 MobiDBLite consensus disorder prediction 332 349 - -
Aed4g2609 531 MobiDBLite consensus disorder prediction 245 349 - -
Aed4g2609 531 Pfam Helix-loop-helix DNA-binding domain 338 384 IPR011598 GO:0046983
Aed4g2609 531 Gene3D - 329 390 IPR036638 GO:0046983
Aed4g2609 531 CDD bHLH_AtPIF_like 334 397 - -
Aed4g2609 531 MobiDBLite consensus disorder prediction 270 300 - -
Aed4g2609 531 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
Aed4g2609 531 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 398 IPR036638 GO:0046983
Aed4g2609 531 Coils Coil 340 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2609 Aed-Chr4 27911944 27916004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2609 8 504 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.756 3.50e-57 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed4g2609 HLH 1.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2609 K16189 - gmx:100784531 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g2609 4 27911944 27916004 Aed4g2609 4 27911944 27916004 ECH