Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2597 ATGCACCATTTTCTGATTTCTAGATTAACAACTAGGATCCCCCATTACGGTGTTCTCTGTCGAAATGCTATTCTTTTCTTCACTTCACGTACTCTATCTGTATCTATCACAAATCACCACAAAGGTGACACCTTTAATGTATTTAGCCTCATCAACTCATCTGGGTTGTCCCCAGAAAAGGCCCTCAAACTCTGCAATAGATTGGAACTGAAAAACCCAGATGGGGTAAATGCTGTAATTGATATTCTCAGGAACTATGGGTTCTCAGAGACCCAGCTATCTAGCCTTGTAAGGAAATTCCCTTCAGTGCTTTTCTCAAAACCAGAAAAGATCCTTTTGCCAAAACTCAAGTTCTTCCATTCTATTGGGTTTTCAACCACTGACCTTCCCAGATTCCTCATTGGAAACCCCACAATTTTTCGTTTAAGCTTGAACAAATCCATTATCCCCCGGTATCAGATTATCAAGAGCCTAGTTTGCAGTGATAAGGAAGTGGTTTCCACTTTGAAGCATGATAGGTGGTCCTTTAACAGTGGAGTGTTAATTAAGTATTCGGTTCGGAATGTTGGGGATTTGAGACAGCTTGGGGTGCCTCAACGTTCCATTTCCTTGTTAGTGACCAATTATCCTTGTGCAGTATTTATGAAGCATTTGAGATTTGTCAAGGCTTTGGAGAAAGTGAAGGAAATGGGGTTTGATCCTTTGAAATCAAGTTTTGTTTTGGCGCTTCAAGTGCTTGTAAAGATGAATGAAGCTATGTGGGAATCAAAATTAGAGGTTCTTGAGAGGTGGGGCTGGTCTAGAGATATCTGTCTTTTAGCTTTCAAAAAGCAACCCCAGTTTATGATGTCGTCGGAAAAGAAGATTATGAAAATATTGAACTTCTTATTGAAAGATATGGGTTTGCCACCAAAAGACATTGCTGGATGCCCTGTGATTCTTGGATGCAGTTTGCAGAAGACAGTTATCCCTAGATTTACAGTTGTTAAAATTTTGAAGTCAAAGGGCTTGATAAAGAGTGATTTGAAAACAAGTACCTTTATTATGATAAGTGAGAGATTGTTTTTGGAGAGATATGTGACCCGATTTCAGAGAGATGAACCACTACTATTAGATGCATACAAAGGTCAGAAGTCAAATTGA 1143 0.392 MHHFLISRLTTRIPHYGVLCRNAILFFTSRTLSVSITNHHKGDTFNVFSLINSSGLSPEKALKLCNRLELKNPDGVNAVIDILRNYGFSETQLSSLVRKFPSVLFSKPEKILLPKLKFFHSIGFSTTDLPRFLIGNPTIFRLSLNKSIIPRYQIIKSLVCSDKEVVSTLKHDRWSFNSGVLIKYSVRNVGDLRQLGVPQRSISLLVTNYPCAVFMKHLRFVKALEKVKEMGFDPLKSSFVLALQVLVKMNEAMWESKLEVLERWGWSRDICLLAFKKQPQFMMSSEKKIMKILNFLLKDMGLPPKDIAGCPVILGCSLQKTVIPRFTVVKILKSKGLIKSDLKTSTFIMISERLFLERYVTRFQRDEPLLLDAYKGQKSN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2597 380 PANTHER CGI-12 PROTEIN-RELATED 23 377 IPR003690 GO:0003690|GO:0006355
Aed4g2597 380 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 23 377 - -
Aed4g2597 380 Pfam mTERF 80 296 IPR003690 GO:0003690|GO:0006355
Aed4g2597 380 Pfam mTERF 293 355 IPR003690 GO:0003690|GO:0006355
Aed4g2597 380 SMART mt_12 203 233 IPR003690 GO:0003690|GO:0006355
Aed4g2597 380 SMART mt_12 130 161 IPR003690 GO:0003690|GO:0006355
Aed4g2597 380 SMART mt_12 304 338 IPR003690 GO:0003690|GO:0006355
Aed4g2597 380 SMART mt_12 272 303 IPR003690 GO:0003690|GO:0006355
Aed4g2597 380 SMART mt_12 94 125 IPR003690 GO:0003690|GO:0006355
Aed4g2597 380 SMART mt_12 237 267 IPR003690 GO:0003690|GO:0006355
Aed4g2597 380 Gene3D Transcription termination factor 3, mitochondrial 180 366 IPR038538 -
Aed4g2597 380 Gene3D Transcription termination factor 3, mitochondrial 50 179 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2597 Aed-Chr4 27813528 27814670 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aed4g2597 mTERF 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2597 K15032 - gmx:106799612 602.053