Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2595 ATGCTTACTCTGCTTAGACAAAGATCTCTCATTTCAACACTAACCACTTATTTTCCATTCATCAACACCCAAACCCAATTCTCTTCTTCTTGTTCGAAATCCGAAACCAAAGACCCAAACTTGACCCTCTCCTACCTGATAAATTCCTGCAACCTCTCCCCCGCATGGGCCCTGAAGCTCTCGAAAAGGGTTCACCTCAAATCCCCCGAGCAGCCCAACGCCGTCCTCAATCTCCTGAAAAACTTCGGATTCTCCGAACCCCAGTTGTCCCTCCTCGTGAAACGCTTCCCGAAAATCCTCCAGACCAAACCCGAAAAGACCATTCTGCCCAAGCTTCAGTTTTTCCTCTCGATCGGCCTCTCCACCTCCGACCTCCCCAAACTCCTCATTGGAAACTCCGTCCTCTTAGAAGGAAGCCTGAAGAAGTGCCTGATCCCGCGCTACGAGATCCTCAGTGCAGTCCTGAGAGACAAAGGCAAGGTCGTCACCGCTTTAAAACGCGTGCCGTGGTGCCTGACAGGCCGCGGCGTGATCGACCATCTGGTGCCCAATGTTGAACACTTGAGACGCGTTGGGGTCACGCAGGGCCCCATTTCCCACATTGTGTGCAACAACCTCGGAGCGGCGTGCGTGGAGCACACCAGATTCGTTAGAGCCGTTGGTGAGGCCGTGGAACTGGGGTTTGATCCAGTGAAAATTGTGTTTGTGGATGCAGTGAAGGTAATTGTGGGGACCAGCAAGGAGAAGTGGGAGAAGAGGTTTGAGGTTTATGAGAGGTGGGGTTGGTCTAATGAGATGTGTCTTTGTGCCTTCAGGAGGTACCCTCAGTGTATGCTGATGTCGGAGGATAAGATTATGAGGACAATGAGGTTCCTTGTCAAGGACATGGGGTGGCCTCCAGATAATGTTTTCCGGACTCCCGGGGTTCTCAGCCCCAACTTGGAGAGGACTATTGTGCCACGCTGTCGCGTTGTTAAGGTGTTGAAGGAGAGGGGGCTTGTCAAGACTGACTTGCGCCTTAGCACTCTTGTTTTCATCACCGAGAACTTGTTTTTAGATAGGTTTGTCAGGCGCTTTCAGGACCGTGTGCCGGGGCTCATGGAGGTCTATAGATTGTAA 1119 0.5183 MLTLLRQRSLISTLTTYFPFINTQTQFSSSCSKSETKDPNLTLSYLINSCNLSPAWALKLSKRVHLKSPEQPNAVLNLLKNFGFSEPQLSLLVKRFPKILQTKPEKTILPKLQFFLSIGLSTSDLPKLLIGNSVLLEGSLKKCLIPRYEILSAVLRDKGKVVTALKRVPWCLTGRGVIDHLVPNVEHLRRVGVTQGPISHIVCNNLGAACVEHTRFVRAVGEAVELGFDPVKIVFVDAVKVIVGTSKEKWEKRFEVYERWGWSNEMCLCAFRRYPQCMLMSEDKIMRTMRFLVKDMGWPPDNVFRTPGVLSPNLERTIVPRCRVVKVLKERGLVKTDLRLSTLVFITENLFLDRFVRRFQDRVPGLMEVYRL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2595 372 Pfam mTERF 76 204 IPR003690 GO:0003690|GO:0006355
Aed4g2595 372 Pfam mTERF 241 351 IPR003690 GO:0003690|GO:0006355
Aed4g2595 372 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Aed4g2595 372 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 24 371 - -
Aed4g2595 372 SMART mt_12 300 334 IPR003690 GO:0003690|GO:0006355
Aed4g2595 372 SMART mt_12 90 121 IPR003690 GO:0003690|GO:0006355
Aed4g2595 372 SMART mt_12 162 194 IPR003690 GO:0003690|GO:0006355
Aed4g2595 372 SMART mt_12 268 299 IPR003690 GO:0003690|GO:0006355
Aed4g2595 372 SMART mt_12 233 263 IPR003690 GO:0003690|GO:0006355
Aed4g2595 372 SMART mt_12 126 157 IPR003690 GO:0003690|GO:0006355
Aed4g2595 372 Gene3D Transcription termination factor 3, mitochondrial 177 361 IPR038538 -
Aed4g2595 372 Gene3D Transcription termination factor 3, mitochondrial 54 176 IPR038538 -
Aed4g2595 372 PANTHER CGI-12 PROTEIN-RELATED 24 371 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2595 Aed-Chr4 27794917 27796035 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aed4g2595 mTERF 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g2595 K15032 - gmx:100778090 602.823