Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g2558 ATGGACAAATATTATGGGAATTCTTCATCGGCTCATGCTGTTGCAGGTCCATCAGAGATTTCCCCACTTAATATTCCAAAAAAGGTGGGAAGCAGTGCATGGGGAATACCACGTGCCAGTGATGTGTTCCATAACTCAAGTGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATGAAAAGTTAGATTTGACTGATTCTGAAAATTTTGGTCAACCAGTTGATGATAACCTGCTAGCATTAGATAAAGTTCACAAAGAGGATGAGGGACATGATCCTTTTGATGACTTTGAAACCAATGCAATTGGAAACATACTTCCCGACGATGAAGAGGACCTTTTAGCTGGGATTATGGATGATTTTGACCTCAGTAAATTGCCCAATCAACTGGAGGATTTGGATGAAAATGATCTGTTTGTCAATGGAGGGGGATTTGAGATGGATTTTGATTCCCAGGAGAGCCTAAGTATCGGTATGTCCAAGATAAGCATATCAGATGGAGTTGCTTCAAATGGTATTGGTCACTATGCAATCTCAAATGGTGCGGGAACAGTAGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTACGAACACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAGCAAGCCCTTGAGACGTAGAAAACTTGATATTCATTTTTCAATTCCCAAGGACAATCCCTCAGAAAAGGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCAAATGATGACCTCCGTCAAATATTCGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACATAAGAGACACCACAAATTCATTGAATTTTATGACGTTAGAGCAGCAGATGCAGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGTCCTGGTGGAGCTCGTAGAAACTTGATGCAACAGCTGAGTCAAGAACTGGAACAAGATGAAGCCCGAACTTTTAGACATCAAGTAGGTTCACCCATGGCCAATTCTCCTCCCGCTAGCTGGGCACAATTTGGTAGTCCAGTTGAACACAATCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGCCATGCCAGTCCCATTAATACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCACATACAACAACCTCTACCAAGATTGCACCAATTGGCAAGGACCCTGGAAGGGCTGCAAATCAGATGTTTGCAAACTCTGGATCAACACAAGGAGCAGCTTTTCAGCATTCTATATCTTTTCCTGAGCAAAATGTAATTGCAAGTCCTAGGCCTATAACCACTTTTGGTGAATCAAGTTCAAGTGCATCAAGTATTGGGACATTGTCTGGTCCTCAATTTCTTTGGGGAAGCCCAACTCCTTACTCCGAGCATTCAAACACTTCTGCCTGGTCTTCATCTTCTGTGGGGCTGCCATTTACATCTAGTGTCCAAAGGCAGGGTTTCCCATATACTAGTAATCGCAGTCCTTTTCTTGGCTCCCACTCCCATCATCATGTTGGATCTGCTCCACCTGGCCTTCCACTTGATAGGCATTTTAGCTACTTCCCTGAGTCACCTGAAGCTTCTCTCATGAGCCCAGTTGCATTTGGAAATTTAAATCACGGTGATGGGAATTTTATGATGAACATGGGTGCTCGTGCATCTGTATCTGTAGGAGCCGGTGTTGGTCTTTCTGGAAGTACCACTGAAATTAGTTCACCCAATTTCAGAATGATGTCTCTGCCTAAGCATGGTTCCTTGTTCCATGGAAATAGTTTGTATTCTGGACCTGGAGCAACTAACATTGAGGGATTAGCTGAACGTGGACGAAGTAGACGACCTGACAATGGTGGGAACCAAATTGATAGTAAGAAGCTGTACCAGCTTGATCTTGACAAAATCGTCAGTGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTATACATCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGTACTTATGATTTCCTCTACTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTCATCAATATGCTGTCTCCTTCACACATCATCGCCTTCTACAAGGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAGGCTGCGCTTGTGATGCATTTCCAGAATTCAAGCTTGATGAATGAGGACAAACGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGAAACTGCTGACCAGGAACATTTTCTATCCAGCAATTTGAATATATGTATTCGCCAACCAGATGGATCCTACTCAGGTGATTTGTTGGAGAGCCCGAAGGGCAATTTGGATCAGAATCTAGAGAAAGATTAA 2577 0.4276 MDKYYGNSSSAHAVAGPSEISPLNIPKKVGSSAWGIPRASDVFHNSSDVSLFSSSLPVLPHEKLDLTDSENFGQPVDDNLLALDKVHKEDEGHDPFDDFETNAIGNILPDDEEDLLAGIMDDFDLSKLPNQLEDLDENDLFVNGGGFEMDFDSQESLSIGMSKISISDGVASNGIGHYAISNGAGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQSKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPMANSPPASWAQFGSPVEHNPLGSFSKSPGLGHASPINTNHLSGLAAILSPHTTTSTKIAPIGKDPGRAANQMFANSGSTQGAAFQHSISFPEQNVIASPRPITTFGESSSSASSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGLPFTSSVQRQGFPYTSNRSPFLGSHSHHHVGSAPPGLPLDRHFSYFPESPEASLMSPVAFGNLNHGDGNFMMNMGARASVSVGAGVGLSGSTTEISSPNFRMMSLPKHGSLFHGNSLYSGPGATNIEGLAERGRSRRPDNGGNQIDSKKLYQLDLDKIVSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMLSPSHIIAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQETADQEHFLSSNLNICIRQPDGSYSGDLLESPKGNLDQNLEKD 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g2558 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Aed4g2558 858 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Aed4g2558 858 SMART rrm1_1 285 353 IPR000504 GO:0003723
Aed4g2558 858 SMART rrm1_1 700 776 IPR000504 GO:0003723
Aed4g2558 858 SMART rrm1_1 200 268 IPR000504 GO:0003723
Aed4g2558 858 CDD RRM1_MEI2_like 198 274 IPR034453 -
Aed4g2558 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Aed4g2558 858 CDD RRM3_MEI2_like 701 786 IPR034454 -
Aed4g2558 858 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Aed4g2558 858 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Aed4g2558 858 Gene3D - 283 381 IPR012677 -
Aed4g2558 858 SUPERFAMILY RNA-binding domain, RBD 700 785 IPR035979 GO:0003676
Aed4g2558 858 PANTHER RNA RECOGNITION MOTIF-CONTAINING 8 853 - -
Aed4g2558 858 Gene3D - 187 282 IPR012677 -
Aed4g2558 858 PANTHER PROTEIN MEI2-LIKE 2 8 853 - -
Aed4g2558 858 CDD RRM2_MEI2_like 283 353 - -
Aed4g2558 858 Pfam RNA recognition motif 2 698 794 IPR007201 -
Aed4g2558 858 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g2558 Aed-Chr4 27539024 27546961 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g2558 194 507 Eukaryotic Initiation Factors Gene Family AT3G16380 23.919 1.91e-11 65.5